Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_010947.1 Length=2755 Score E Sequences producing significant alignments: (Bits) Value seq519 129 1e-26 >seq519 Length=3254320 Score = 129 bits (142), Expect = 1e-26 Identities = 323/480 (67%), Gaps = 13/480 (3%) Strand=Plus/Plus Query 2097 AAATTTGAATTTAAATTATGAAACTGAAAAATATAATCTTTTGGGAGTTTCTCCCTTATT 2156 ||||| ||||| ||||||||| | || | ||| || |||||| |||||| ||||| Sbjct 1748825 AAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCTTTGGGTCTTTCTCTTTTATT 1748884 Query 2157 ATTGCTAATGCAGCTTCTTTTGAACCTGCAT--TTAA-CGCCTCTGCACATGCGTCATTA 2213 ||| |||||| || ||| ||| ||||| |||| ||| || || || | || | Sbjct 1748885 ATTTGTAATGCTGCATCTCTTGG---TGCATAATTAATCGCTTCAGCGTATACATCTGCA 1748941 Query 2214 GC-ATTCTGGCAGCCTCCCCTAGCACTTCTTCCGTCGACCTGGAACTGACCCCATTCAAT 2272 | ||| | | | ||||||| || |||||| || | || || | | |||| || | Sbjct 1748942 ACTATTTTCTTA-CATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTAC 1749000 Query 2273 GGTGTCTCCATCCTTGTCGATGTAGGACTTGAC--ATCGGAGCTGGATTTAGCTCCCTGA 2330 |||||| ||||| || ||||| || || || ||| || | |||||||| ||| Sbjct 1749001 ATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGA 1749060 Query 2331 ATGTTTGGATGGAAATGTGTTGACCGGGTTGGGGATACCAGGTCGAAGAATCTCTGATTC 2390 | ||||||||||| || | | | || ||| | | |||||| || | ||||| Sbjct 1749061 ACATTTGGATGGAATTGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTG 1749119 Query 2391 GTGCAGTTGAATTTGCCTTCGAACTGCACGAGCACGTGGAGATGAGGGCTCCCATCCTCG 2450 |||||| |||||| ||| ||||| | || || || | ||| || || | || | Sbjct 1749120 GTGCAGCAGAATTTCCCTGTGAACTAGA-GATTACATGCAAATGTGGTTCCCGTTGCT-G 1749177 Query 2451 TGCAATTCTCTGCAAATTTTTATGAATTTTTTATTGGTAGGGGTTTGCAGGTTCTGTAAT 2510 || | ||||||||| | |||||||||||| ||| |||||| | ||||| | | Sbjct 1749178 TGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGA 1749237 Query 2511 TGGGAAAGTGCTTCCTCTTTGGTGAGAGAGCACTGTGGGTATGTTAAGAAATAATTTTTG 2570 || ||| | || ||||| ||||| | || |||| | || | |||||||||||| Sbjct 1749238 TGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTG 1749297 Score = 127 bits (140), Expect = 4e-26 Identities = 322/487 (66%), Gaps = 2/487 (0%) Strand=Plus/Plus Query 2085 AAAATCCTATCTAAATTTGAATTTAAATTATGAAACTGAAAAATATAATCTTTTGGGAGT 2144 ||||| | | | ||||| ||||| ||||||||| | || | | | || |||||| Sbjct 1742998 AAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTTGGGTCA 1743057 Query 2145 TTCTCCCTTATTATTGCTAATGCAGCTTCTTTTGAACCTGCATTTAACGCCTCTGCACAT 2204 ||||| |||||||| ||||| | ||| |||| | | ||| | ||| | | || Sbjct 1743058 TTCTCTTTTATTATTTGTAATGTTGAATCTCTTGACCTAGAATTAATCGCTTTAGTGTAT 1743117 Query 2205 GCGTCATTAGCATTCTGGCAGCCTCCCCTAGCACTTCTTCCGTCGACCTGGAACTGACCC 2264 | || | | | || | |||||||||| |||||| || | || || | | | Sbjct 1743118 ACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCT 1743177 Query 2265 CATTCAATGGTGTCTCCATCCTTGTCGATGTAGGACTTGACATCGGAGCTGGATTTAGCT 2324 || || | | |||||| ||||| |||||||| || || |||| ||| | ||||||| Sbjct 1743178 CAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAA 1743237 Query 2325 CCCTGAATGTTTGGATGGAAATGTGTTGACCGGGTTGGG-GATACCAGGTCGAAGAATCT 2383 |||| ||| ||||||| || | | | | | ||| |||| | ||| || |||| Sbjct 1743238 AATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCA 1743296 Query 2384 CTGATTCGTGCAGTTGAATTTGCCTTCGAACTGCACGAGCACGTGGAGATGAGGGCTCCC 2443 ||||| ||||| |||||| ||| ||| || | || || || | ||| || ||| Sbjct 1743297 TTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCC 1743356 Query 2444 ATCCTCGTGCAATTCTCTGCAAATTTTTATGAATTTTTTATTGGTAGGGGTTTGCAGGTT 2503 | ||| | |||| |||| | | ||||||||||| ||| |||||| | ||| | Sbjct 1743357 GTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCT 1743416 Query 2504 CTGTAATTGGGAAAGTGCTTCCTCTTTGGTGAGAGAGCACTGTGGGTATGTTAAGAAATA 2563 | | || ||| || || ||||| ||||| || || |||| | || | ||||| Sbjct 1743417 TTTGAGATGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATG 1743476 Query 2564 ATTTTTG 2570 ||||||| Sbjct 1743477 ATTTTTG 1743483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8706883787148