Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_010949.1 Length=2561 Score E Sequences producing significant alignments: (Bits) Value seq1129 158 2e-35 seq519 138 2e-29 seq1694 111 3e-21 seq3069 78.8 2e-11 >seq1129 Length=1508174 Score = 158 bits (174), Expect = 2e-35 Identities = 251/354 (71%), Gaps = 12/354 (3%) Strand=Plus/Minus Query 1459 ATTTTCATGTTTGTCTAGGAAGTCTTTATAACTAGCCCCCTCTCCTGGATTGCAGAGCAC 1518 |||||| | ||| |||||||| |||||||| | || || || |||||||| || | | Sbjct 679416 ATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAA 679357 Query 1519 GATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTCCCGTATTTGCAGTTGCTTTGCCA 1578 ||||||||||| ||||||||| |||| || ||||| || ||||| || |||||||| Sbjct 679356 GATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCA 679297 Query 1579 GTCACGTTGGGCCCCAATGAGCTCTTTCCAATGTTTTAGCTTTAGGTATTGCGGAGTGAC 1638 || || | ||||||| | |||||| |||| || | ||||| ||| ||||| || Sbjct 679296 ATC-TTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTAC 679238 Query 1639 ATCATCAATGACGTTATA--ATGCACCTCAT--TTGAATAAACCCTAGAATTAAAATCTA 1694 |||||| ||||| ||||| |||| |||| | ||||| | | || ||||||| Sbjct 679237 ATCATCTATGACATTATATGTTGCA--TCATTGTGGAATACTGATTTG--TTGAAATCTA 679182 Query 1695 ---GATGTCCACTCAGATAATTATGTGGGCCTAATGCACGAGCCCACATCGTCTTTCCTG 1751 |||| || | | |||||||| || | | || || ||| | | || || ||| Sbjct 679181 AGTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTA 679122 Query 1752 TACGACTATCACCCTCAATTATAATACTAATAGGTCTCTCCGGCCGCGCAGCGG 1805 | ||||| || ||||| || ||||| ||||||| || |||| |||| ||| Sbjct 679121 TTCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 138 bits (152), Expect = 2e-29 Identities = 174/239 (73%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 1422 ATTTAGCATTATGCAGTGTCCACGTTTTTAAAGATATATTTTCATGTTTGTCTAGGAAGT 1481 ||| |||||| || || |||| | || | || || |||||| | || |||||||| | Sbjct 1742253 ATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAAT 1742312 Query 1482 CTTTATAACTAGCCCCCTCTCCTGGATTGCAGAGCACGATTGATGGGATTCCTCCTTTAA 1541 ||||||| || ||||| | | ||| ||| | |||||||||||||| || ||||||| Sbjct 1742313 CTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAA 1742372 Query 1542 TTTGAACTGGCTTCCCGTATTTGCAGTTGCTTTGCCAGTCACGTTGGGCCCCAATGAGCT 1601 ||| ||| | |||| | ||||| || |||||||| || ||| ||||||| | | Sbjct 1742373 TTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATT 1742432 Query 1602 CTTTCCAATG----TTTTAGCTTTAGGTATTGCGGAGTGACATCATCAATGACGTTATA 1656 |||||||||| | | ||||| |||| |||| |||||||||||||| ||||| Sbjct 1742433 CTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 Score = 82.4 bits (90), Expect = 1e-12 Identities = 198/283 (70%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 1075 ATGTCGTCCAGA-CTTGGAAATTGAGAAAAGCCTTGTGGAGATCCAACGCTTTCCGCAGG 1133 |||||||||||| |||| ||| | | | ||||| || | | | | ||||| || Sbjct 1741827 ATGTCGTCCAGATCTTGAAAAAT-ATCTATGCCTTATGAAATTGTAGGGTTTTCCTGAGA 1741885 Query 1134 TTGTGGTTGAAACGTATCTGTAGATGGTAT-AT-CCGT-GTCGTTGTGTAGAGGGGGTCC 1190 |||| ||||||| ||||||| | | ||| || ||| || ||||| || | | ||| Sbjct 1741886 TTGTAGTTGAAATGTATCTGGA-TTTCTATGATGTCGTGGTTGTTGT-TAAATTGTCTCC 1741943 Query 1191 TCTACGTT--GATTATCTTGAAATAGAGGGGA-TTGGTAATCTCCCAAATAAAGACGCCA 1247 ||| || |||||||||||||||||| | |||||||| |||||| | | || ||| Sbjct 1741944 TCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAAT-TCCCAAGGATATACACCA 1742002 Query 1248 TTCGCTGC-TTGAGGCGCAGTGATGAGTTCCCCGGTGCGTGAATCCATTGTTGCGACAGT 1306 || | ||| ||| || ||||| ||||||||||| | ||||||| ||| | ||||| Sbjct 1742003 TT-GTTGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCCTACAGT 1742060 Query 1307 TGAGATGGATGTAAATGGAGCAGCCGCAGTTTAGGTCAATGCG 1349 | | || |||| ||| || |||| || |||||||| Sbjct 1742061 TAATGTGTTGGTAATATATGCAACCACAGTATATATCAATGCG 1742103 Score = 77.0 bits (84), Expect = 5e-11 Identities = 162/239 (68%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 2050 ACCTCCTCTAGCTGATCTTCCATCGATCTGGAAAGTTCCAAAATCAATGAAGTCTCCGTC 2109 || ||| ||||| ||||||||||| || || ||| | |||| | | ||||||| || Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTC 1743197 Query 2110 TTTCTCCATGTAGGTCTTGACGTCTGACGAGCTTTTAGCTCCCTGAATGTTTGGATGGAA 2169 || || ||||| | || || | || | ||||| |||| ||| ||||||| Sbjct 1743198 CTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAA 1743257 Query 2170 ATGTGCTGATCTGGTTGGG-GATACCAAATCGAAGAATCGTTGATTGTGGCATTTGAATT 2228 || | |||| | ||| |||| | || || |||| ||||||| ||| ||||| Sbjct 1743258 TTGAATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATT 1743316 Query 2229 TGCCTTCGAACTGTATAAGCACGTGGAGATGAGGTTCCCCATCTTCGTGAAGTTCTCTG 2287 | ||| ||| || ||||| || || | ||| |||||||| | ||| |||||| || Sbjct 1743317 TACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTG 1743375 >seq1694 Length=789422 Score = 111 bits (122), Expect = 3e-21 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 1427 GCATTATGCAGTGTCCACGTTTTTAAAGATATATTTTCATGTTTGTCTAGGAAGTCTTTA 1486 ||||| || || ||||| | || | | | |||||| | || || |||| |||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1487 TAACTAGCCCCCTCTCCTGGATTGCAGAGCACGATTGATGGGATTCCTCCTTTAATTTGA 1546 || || || || |||||||| || | |||||||||| ||| | | |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1547 ACTGGCTTCCCGTATTTGCAGTTGCTTTGCCAGTCACGTTGGGCCCCAATGAGCTCTTTC 1606 || | ||||| || ||||| | |||||||| || ||| ||||||| | |||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1607 CAATGTTTTAGCTTTAGGTATTGCGGAGTGACATCATCAATGACGTTAT 1655 | || || | ||||| ||| |||| ||||||||||| | |||| Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTAT 599638 Score = 87.8 bits (96), Expect = 3e-14 Identities = 115/158 (73%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 1422 ATTTA-GCATTATGCAGTGTCCACGTTTTTAAAGATATATTTTCATGTTTGTCTAGGAAG 1480 ||||| |||| || |||| ||| | || | | | |||||| | ||| || | ||| Sbjct 596276 ATTTATGCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAAA 596217 Query 1481 TCTTTATAACTAGCCCCCTCTCCTGGATTGCAGAGCACGATTGATGGGATTCCTCCTTTA 1540 ||| | || || || || | | ||||||| | |||||||||||||| || |||||| Sbjct 596216 TCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTTA 596157 Query 1541 ATTTGAACTGGCTTCCCGTATTTGCAGTTGCTTTGCCA 1578 |||| ||| || ||||| || ||||| || |||||||| Sbjct 596156 ATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCCA 596119 >seq3069 Length=10854949 Score = 78.8 bits (86), Expect = 2e-11 Identities = 166/232 (72%), Gaps = 13/232 (6%) Strand=Plus/Plus Query 1075 ATGTCGTCCAGA-CTTGGAAATTGAGAAAAGCCTTGTGGAGATCCAACGCTTTCCGCAGG 1133 |||||||||||| |||| ||| | | | ||||| || | | ||| ||||||| ||| Sbjct 3754358 ATGTCGTCCAGATCTTGAAAAAT-ATCCATGCCTTCTGAAATTTCAAGGCTTTCCTGAGG 3754416 Query 1134 TTGTGGTTGAAACGTATCTGTAGATGGTAT-AT-CCGT-GTCGTTGTGTAGAGGGGGTCC 1190 ||| |||||| ||||||| | | ||| || ||| |||||||| || | || ||| Sbjct 3754417 TTGAAGTTGAATTGTATCTGGATCT-CTATGATGTCGTGGTCGTTGT-TAAATGGTCTCC 3754474 Query 1191 TCTACGTTGA--TTATCTTGAAATAGAGGGGA-TTGGTAATCTCCCAAATAAAGACGCCA 1247 ||| | | ||| ||||||||| |||||| |||||| | || |||||| | ||| || Sbjct 3754475 TCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACT-TCTCAAATATATACGTCA 3754533 Query 1248 TTCGCTGC-TTGAGGCGCAGTGATGAGTTCCCCGGTGCGTGAATCCATTGTT 1298 || | ||| | || || ||||| || ||| ||||| ||| ||||||| Sbjct 3754534 TT-GTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTT 3754584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8086106332276