Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_010952.1 Length=2605 Score E Sequences producing significant alignments: (Bits) Value seq1694 158 2e-35 seq519 150 3e-33 seq1129 149 1e-32 >seq1694 Length=789422 Score = 158 bits (174), Expect = 2e-35 Identities = 211/291 (73%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 1472 GCATTCTTGAGTGTCCAGTTCCTGAGACCTACATTTTCCTCTTTGCTCAGGAAGTCTTTA 1531 ||||| | ||| ||||| ||| |||| | ||||||||||||| | |||| |||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1532 TAGCTAGCACCCTCACCAGGATTGCACAGCACGATTGATGGGATTCCACCTTTAATTTGG 1591 ||| ||||| ||||| ||||| |||| |||||||||| ||| ||| ||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1592 ACTGGCTTCCCGTATTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCGACAAGTTCTTTC 1651 || | ||||| || ||||||| ||||| |||||||| |||| | || ||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1652 CAGTGCTTTAGCTTTAGGT-AGTGCGGTGCAACGTCATCAATGACGTTATAATCCACCTC 1710 | ||||| | ||||| || |||| || || | ||||||||| | |||| | || Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTATCTGGTGCATC 599628 Query 1711 GTTCGAGAACACTCTTGGATTGAAGTCCAGATGTCCACTTAGGTAATTGTG 1761 ||| |||| ||| | ||||| || || || |||| |||||| || Sbjct 599627 ATTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATG 599577 Score = 109 bits (120), Expect = 9e-21 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 1472 GCATTCTTGAGTGTCCAGTTCCTGAGACCTACATTTTCCTCTTTGCTCAGGAAGTCTTTA 1531 |||| | ||||| ||| ||| | || | |||||||||||||| || ||| ||| | Sbjct 596270 GCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAAATCTCTG 596211 Query 1532 TAGCTAGCACCCTCACCAGGATTGCACAGCACGATTGATGGGATTCCACCTTTAATTTGG 1591 ||| ||||| |||| ||||||||| |||||||||||||| ||||||||||||| Sbjct 596210 TAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTTAATTTTA 596151 Query 1592 ACTGGCTTCCCGTATTTGCAATT 1614 || || ||||| || |||||||| Sbjct 596150 ACGGGTTTCCCATACTTGCAATT 596128 >seq519 Length=3254320 Score = 150 bits (166), Expect = 3e-33 Identities = 176/235 (75%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 1472 GCATTCTTGAGTGTCCAGTTCCTGAGACCTACATTTTCCTCTTTGCTCAGGAAGTCTTTA 1531 ||||| | || |||| ||| ||||| ||||||||||||| || ||||| |||||| Sbjct 1742258 GCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTA 1742317 Query 1532 TAGCTAGCACCCTCACCAGGATTGCACAGCACGATTGATGGGATTCCACCTTTAATTTGG 1591 ||| |||||||||| ||| ||||| |||||||||||||| ||||||||||||| Sbjct 1742318 TAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAA 1742377 Query 1592 ACTGGCTTCCCGTATTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCGACAAGTTCTTTC 1651 || | |||| | |||||||| ||||| |||||||| |||| | | ||||||| Sbjct 1742378 ACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTC 1742437 Query 1652 CAGTG----CTTTAGCTTTAGGTA-GTGCGGTGCAACGTCATCAATGACGTTATA 1701 || || || | ||||| ||| ||| || || || ||||||||||| ||||| Sbjct 1742438 CAATGCTACCTACATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTATA 1742491 >seq1129 Length=1508174 Score = 149 bits (164), Expect = 1e-32 Identities = 174/231 (75%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 1472 GCATTCTTGAGTGTCCAGTTCCTGAGACCTACATTTTCCTCTTTGCTCAGGAAGTCTTTA 1531 ||||| | ||| ||| | ||| |||| | |||||||||||||| ||||| |||||| Sbjct 679448 GCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTA 679389 Query 1532 TAGCTAGCACCCTCACCAGGATTGCACAGCACGATTGATGGGATTCCACCTTTAATTTGG 1591 |||| ||||| ||||| ||||| |||| | ||||||||||| |||||||||| | Sbjct 679388 TAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGA 679329 Query 1592 ACTGGCTTCCCGTATTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCGACAAGTTCTTTC 1651 || || ||||| || |||||||| ||||| ||||||| | |||| | | |||||| Sbjct 679328 ACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTT-GCCCCCAATCAAATCTTTC 679270 Query 1652 CAGTGCTTTAGCTTTAGGT-AGTGCGGTGCAACGTCATCAATGACGTTATA 1701 | ||||| | ||||| || |||| || | || ||||| ||||| ||||| Sbjct 679269 TAATGCTTCATCTTTAAGTAAGTG-GGAGTTACATCATCTATGACATTATA 679220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8226901218948