Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_011024.1 Length=2771 Score E Sequences producing significant alignments: (Bits) Value seq519 138 2e-29 seq1694 91.5 3e-15 seq1129 89.7 9e-15 >seq519 Length=3254320 Score = 138 bits (152), Expect = 2e-29 Identities = 341/507 (67%), Gaps = 14/507 (3%) Strand=Plus/Plus Query 2101 AAAATCCTATCTAAATTTGAACTTAAATTATGAAATTGTAAAATATAGTCCTTTGGGGCC 2160 ||||| | | | ||||| ||| | ||||||||| |||||| | | | ||||||| | Sbjct 1742998 AAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTTGGGTCA 1743057 Query 2161 TTCTCTTTTAATATATTGAGGGCCTCGGATTTACTG-CCT-GAATTGAGTGCTTCGGCAT 2218 |||||||||| ||| | | | | | || | || ||| ||||| | |||| | | Sbjct 1743058 TTCTCTTTTATTATTTGTAATG--TTGAATCTCTTGACCTAGAATTAATCGCTTTAGTGT 1743115 Query 2219 ATGCGTCGTTGGCAGATTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTC 2278 || | || | ||||| || ||| ||||| ||||| ||||| ||||| ||| | Sbjct 1743116 ATACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCAT 1743175 Query 2279 CAAAATCAATGAATTCTCCGTCTTTCTCCACGTAGGTCTTGACATCTG---TTGAGCTCT 2335 | |||| | | | ||||| || || || | ||| | || |||| | |||| | Sbjct 1743176 CTCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGAT---T 1743232 Query 2336 TAGCTGCCTGAATGTTCGGATGGAAATGTGCTGACCTGTTTGGG-GATACCAGGTCGAAG 2394 ||| |||| || ||||||| || | ||||| ||| |||| | ||| || Sbjct 1743233 TAGAAAATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAA 1743291 Query 2395 AACCGTTGGTTTTTACATTGGTATTTGCCTTCGAATTGGATAAGCACATGGAGATGTGGT 2454 || | ||| || | || | |||| ||| ||| |||||||| ||||| | ||||||| Sbjct 1743292 AATCATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGT 1743351 Query 2455 TCCCCATTCTCGTGGAATTCTCTGCAAACTTTGATGTATTTTTTATTTGTTGGGGTTTCT 2514 ||||| || ||| | |||| |||| ||| | ||| ||||| |||||| ||| | Sbjct 1743352 TCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGTTG 1743411 Query 2515 AGGTTTTTTAATTGGGAAAGTGCTTCCTCTTTAGAGAGATAACA-ATTGGGATATGTCAG 2573 ||| |||| | || ||| || || ||||| | ||| |||| |||||| | || || Sbjct 1743412 AGGCTTTTGAGATGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAG 1743470 Query 2574 GAAATAATTTTTGGCATATATTTTAAA 2600 ||||| ||||||| || |||| |||| Sbjct 1743471 GAAATGATTTTTGCTATTTATTCTAAA 1743497 Score = 113 bits (124), Expect = 8e-22 Identities = 329/495 (66%), Gaps = 15/495 (3%) Strand=Plus/Plus Query 2113 AAATTTGAACTTAAATTATGAAATTGTAAAATATAGTCCTTTGGGGCCTTCTCTTTTAAT 2172 ||||| ||| | ||||||||| |||||| ||| | ||||||| | |||||||||| | Sbjct 1748825 AAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCTTTGGGTCTTTCTCTTTTATT 1748884 Query 2173 ATATTGAGGGCCTCGGAT-TTACTGCCTGAATTGAGTGCTTCGGCATATGCGTCGTTGGC 2231 || | | || | | || ||| | |||| | ||||| || ||| | || | Sbjct 1748885 ATTTGTAATGCTGCATCTCTTGGTGCAT-AATTAATCGCTTCAGCGTATACATCTGCAAC 1748943 Query 2232 AGATTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGAA 2291 || || || ||| ||| | ||||| ||||| ||||| ||| | | |||| | | Sbjct 1748944 TATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATA 1749003 Query 2292 TTCTCCGTCTTTCTCCACGTAGGTCTTGAC--ATCT---GTTGAGCTCTTAGCTGCCTGA 2346 ||||| || || || | ||| | || || ||| ||||| ||||| ||| Sbjct 1749004 GTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGAT---TTAGCATATTGA 1749060 Query 2347 ATGTTCGGATGGAAATGTGCTGACCTGTTTGGGGATACCAGGTCGAAGAACCGTTGGTTT 2406 | || |||||||| || | || || ||| | | |||||| |||| ||| || Sbjct 1749061 ACATTTGGATGGAATTGAATGGTTCTATTAGGGTTTGT-ATGTCGAAAAACCATTGATTG 1749119 Query 2407 TTACATTGGTATTTGCCTTCGAATTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCG 2466 | || | |||| ||| ||| | || | ||||| | ||||||||||| | || | Sbjct 1749120 GTGCAGCAGAATTTCCCTGTGAACTAGAGATT-ACATGCAAATGTGGTTCCCGTTGCT-G 1749177 Query 2467 TGGAATTCTCTGCAAACTTTGATGTATTTTTTATTTGTTGGGGTTTCTAGGTTTTTTAAT 2526 || | ||||||||| ||||| ||| |||| |||||| ||| | |||||||| | Sbjct 1749178 TGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGA 1749237 Query 2527 TGGGAAAGTGCTTCCTCTTTAGAGAGATAACAA-TTGGGATATGTCAGGAAATAATTTTT 2585 || ||| | || ||||| | ||| |||| |||||| | || || ||||||||||| Sbjct 1749238 TGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGAAA-GTGAGAAAATAATTTTT 1749296 Query 2586 GGCATATATTTTAAA 2600 | || |||| |||| Sbjct 1749297 GCTATTTATTCTAAA 1749311 Score = 82.4 bits (90), Expect = 1e-12 Identities = 150/216 (69%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 1310 TTCCTCAAATTGTGGTTGAATCTGATTTGGAATATTAGTGTGTTGTACTTGTTGTTGAAT 1369 ||||| | ||||| |||||| || |||| | || ||| || |||||||| ||| Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1370 GGGTTCTGATTGTGTTTGGTTATCTTGAAATATAGGGGATTT-GTTATCCCGAAGGTATA 1428 | || | || | |||||||||||||| |||| |||| || || || |||| ||| Sbjct 1741937 TGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGG-ATA 1741995 Query 1429 AACGCCACTCGTTGCTTGAAGCGCAGTGATGTACTCCCCTGTGCGTAAATCCATGATTTA 1488 || ||| | ||||| ||| ||||| | ||||| ||| | |||||||| || Sbjct 1741996 TACACCA-TTGTTGCACTGAGCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCC 1742054 Query 1489 TGCAGTCTAAGTGTATGTAATATGAGCATCCACAGT 1524 | |||| | |||| ||||||| ||| ||||||| Sbjct 1742055 TACAGTTAATGTGTTGGTAATATATGCAACCACAGT 1742090 >seq1694 Length=789422 Score = 91.5 bits (100), Expect = 3e-15 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 2388 GTCGAAGAACCGTTGGTTTTTACATTGGTATTTGCCTTCGAATTGGATAAGCACATGGAG 2447 |||||| ||| ||| || | |||| | |||| ||| ||| |||| ||| || || | Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2448 ATGTGGTTCCCCATTCTCGTGGAATTCTCTGCAAACTTTGATGTATTTTTTATTTGTTGG 2507 |||||||||||| | ||| | ||||||||| || | ||| |||| |||||| | Sbjct 588189 ATGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAG 588130 Query 2508 GGTTTCTAGGTTTTTTAATTGGGAAAGTGCTTCCTCTTTAGAGAGATAACA-ATTGGGAT 2566 | |||||||| | || ||| | || ||||| |||||| |||| |||||| Sbjct 588129 ATAGTTGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGGGA- 588071 Query 2567 ATGTCAGGAAATAATTTTTGGCATATATTTTAAA 2600 | || |||||||| |||| | || |||| |||| Sbjct 588070 AAGTGAGGAAATAGTTTTAGCTATTTATTCTAAA 588037 Score = 89.7 bits (98), Expect = 9e-15 Identities = 245/370 (66%), Gaps = 8/370 (2%) Strand=Plus/Minus Query 2235 TTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGAATTC 2294 ||||| || || ||||| ||||| ||||||||||| ||| | || |||| | | | || Sbjct 599270 TTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTC 599211 Query 2295 TCCGTCTTTCTCCACGTAGGTCTTGACATCTGTTGAG-CTC--TTAGCTGCCTGAATGTT 2351 ||| || || || | ||| | || |||| | ||| || || | | ||||| | Sbjct 599210 TCCCTCCTTTTCAATGTATGATTTAACAT---TAGAGGCTGATTTTGTAGACTGAACACT 599154 Query 2352 CGGATGGAAATGTGCTGACCTGTTTGGGGATACCAGGTCGAAGAACCGTTGGTTTTTACA 2411 |||||||| || | ||||| ||| | | |||||| |||| ||| | | || Sbjct 599153 TGGATGGAATTGAATAGTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTCA 599095 Query 2412 TTGGTATTTGCCTTCGAATTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGGAA 2471 | |||| ||| ||||| || ||| || || | |||||||||||| || || || Sbjct 599094 ACAGAATTTTCCTGTGAATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTAA 599035 Query 2472 TTCTCTGCAAACTTTGATGTATTTTTTATTTGTTGGGGTTTCTAGGTTTTTT-AATTGGG 2530 ||||| ||| ||| | ||| |||| |||| | | | | |||||||| || || Sbjct 599034 TTCTCAGCACACTCTTATGAATTTGAGATTTATAGCGTAGTTGGGGTTTTTTGAAATGAT 598975 Query 2531 AAAGTGCTTCCTCTTTAGAGAGATAACAATTGGGATATGTCAGGAAATAATTTTTGGCAT 2590 ||| | || ||||| ||||| | || | || | || ||||||| ||| | || Sbjct 598974 GAAGAACATCATCTTTTAAGAGAGAGCATCTTGGTAAAGTGTGGAAATAGTTTAAGCTAT 598915 Query 2591 ATATTTTAAA 2600 |||| |||| Sbjct 598914 TTATTCTAAA 598905 Score = 84.2 bits (92), Expect = 4e-13 Identities = 148/208 (71%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 1318 ATTGTGGTTGAATCTG-ATTTGGAATATTAGTGTGTTGTACTTGTTGTTGAATGGGTTCT 1376 ||||| |||||| ||| ||||||| || ||| || |||||||||||||| || Sbjct 596642 ATTGTAGTTGAA-CTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCC 596584 Query 1377 GATTGTGTTTGGTTATCTTGAAATATAGGGGATTTGTTA-TCCCGAAGGTATAAACGCCA 1435 | |||| |||||||||||||| || |||||| || | || || | ||| |||||| Sbjct 596583 TCTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAA-GCATATACGCCA 596525 Query 1436 CTCGTTGC-TTGAAGCGCAGTGATGTACTCCCCTGTGCGTAAATCCATGATTTATGCAGT 1494 | ||||| || | |||||| | ||||| |||| |||||||| || |||| | Sbjct 596524 -TTGTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAAT 596466 Query 1495 CTAAGTGTATGTAATATGAGCATCCACA 1522 | ||| |||||||| ||| ||||| Sbjct 596465 TAATATGTTGGTAATATGTGCAACCACA 596438 >seq1129 Length=1508174 Score = 89.7 bits (98), Expect = 9e-15 Identities = 209/311 (67%), Gaps = 12/311 (4%) Strand=Plus/Minus Query 1702 CCTGGATTGCAGAGGAAGATAGTGGGAATGCCTCCTTTAATTTGAATGGGCTTCCCATAC 1761 |||||||| || | ||||| | || | | ||||||||| ||| ||| ||||||||| Sbjct 679373 CCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATAC 679314 Query 1762 TTGGTGTTGCTCTGCCAGTCTCTTTGGGCCCCCATAAACTCTTTAAAGTG------CTTT 1815 ||| || || ||||| ||| ||| | |||| || || ||||| | || |||| Sbjct 679313 TTGCAATTACTTTGCCAATCT-TTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTT 679255 Query 1816 AAATAA-TGCGGGTCGACGTCATCAATGACGTTATACCAAGCATTATTGCTGTATACTTT 1874 || ||| || | || || ||||| ||||| ||||| |||| |||| | ||||| Sbjct 679254 AAGTAAGTGGGAGT-TACATCATCTATGACATTATATGTTGCATCATTGTGGAATACTGA 679196 Query 1875 TTGACTGAGGTCAA---GATGGCCGCACAAATAATTATGTGGGCCTAAGGAACGGGCCCA 1931 || ||| || | |||||||| | |||||||| || | | || |||||| | Sbjct 679195 TTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAA 679136 Query 1932 CATGGTCTTTCCTGTCCGGCTGTCACCCTCAATCACTATACTTACCGGTCTCCAAGGCCG 1991 | || || ||| | || || || ||||| | ||||||| ||||| |||| Sbjct 679135 AGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCA 679076 Query 1992 CGCAGCGGCAT 2002 |||| ||| || Sbjct 679075 CGCATCGGTAT 679065 Score = 82.4 bits (90), Expect = 1e-12 Identities = 328/507 (65%), Gaps = 42/507 (8%) Strand=Plus/Minus Query 2115 ATTTGAACTTAAATTATGAAATTGTAAAATATAGTCCTTTGGGGCCTTCTCTTTTAATAT 2174 ||| ||| ||| ||||||| |||||| ||| | ||||||| | |||||||||| ||| Sbjct 678893 ATTGGAAATTAGATTATGATATTGTAGAATGAAACTCTTTGGGTCTTTCTCTTTTATTAT 678834 Query 2175 AT-TGAGGGCCTC--GGATTT----ACTGCCTGAATTGAGTGCTTCGGCATATGCGTCGT 2227 | | | || | || | ||| | ||||| | |||| ||||||| | || Sbjct 678833 TTGTAATATACTGTTGCATCTCTAAACT--CAGAATTAATCGCTTTGGCATATACATCTG 678776 Query 2228 TGGCAGATTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAA 2287 | | ||||| || ||| ||||| |||| || || ||||| ||| | || |||| | Sbjct 678775 CAACTGTTTGCTTACATCCCCTAGCATATCTTCCTTCAATTTGAAAATCACCCCAATCTA 678716 Query 2288 TGAATTCTCCG-----TCTTTCTCCACGTAGGTCTTGACATCTGTTGAGCTCTTAGCTGC 2342 | |||||| || || || | ||| | || | ||| || ||| | Sbjct 678715 CATAGTCTCCGATCCCTCCTTTTCAATGTATGATTTAATATCATTT--------AGCAGA 678664 Query 2343 CTGAATGTTCGGATGGAAATGTG-CTGACCTGTTTGGGGATACCAGGTCGAAGAACCGTT 2401 |||| || |||||| ||| ||| |||| | || |||||| |||| || Sbjct 678663 TTGAACATTTGGATGGTTCTGTTACTG---TGTT---GTAT-----GTCGAAAAACCTTT 678615 Query 2402 GGTTTTTACATTGGTATTTGCCTTCGAATTGGATAAGCACATGGAGATGTGGTTC----- 2456 | || | ||| | |||| ||| ||| |||| ||| || || | ||||||||| Sbjct 678614 GATTAGTGCATCAGAATTTCCCTATGAACTGGAGAAGTACGTGCAAATGTGGTTCCCCGG 678555 Query 2457 CCCATTCTCGTGGAATTCTCTGCAAACTTTGATGTATTTTTTATTTGTTGGGGTTTCTAG 2516 ||| || | | | | || | |||| | | | ||| | ||| |||||| ||| | || Sbjct 678554 CCCGTTGTTGCGTAGTTTTATGCACATTCTTATGAAGTTTAGATTTGTAGGGTAGTTGAG 678495 Query 2517 GTTTTTTAATTGGGAAAGTGCTTCCTCTTTAGAGAGATAACA-ATTGGGATATGTCAGGA 2575 | |||| | || ||| || || ||||| |||||| |||| ||| || | | |||| Sbjct 678494 G-TTTTGAGATGATGAAGAGCATCATCTTTTGAGAGAGAACATCTTGAGA-AACTGAGGA 678437 Query 2576 AATAATTTTTGGCATATATTTTAAATA 2602 |||| |||||| || |||| |||||| Sbjct 678436 AATAGTTTTTGCTATTTATTCTAAATA 678410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8754872692320