Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_011052.2 Length=2780 Score E Sequences producing significant alignments: (Bits) Value seq519 80.6 5e-12 >seq519 Length=3254320 Score = 80.6 bits (88), Expect = 5e-12 Identities = 312/478 (65%), Gaps = 17/478 (4%) Strand=Plus/Plus Query 2127 AAATTATGATATTGAAATATAAATTTTTCAGGGAGTTTCTCCCTGATTATTTGTAAAGCA 2186 |||||||||||||| | || || | | ||| |||||| | ||||||||||| || Sbjct 1748837 AAATTATGATATTGTAGAATGAAACTCTTTGGGTCTTTCTCTTTTATTATTTGTAATGCT 1748896 Query 2187 GCGTCCTTACTTCCTGCAT--TTAAT-GCTTCTGCTGCTGCGTCGTTAGCAGTCTGCTGG 2243 || || ||| ||||| ||||| ||||| || | | || | | | | || Sbjct 1748897 GCATCT---CTTGGTGCATAATTAATCGCTTCAGCGTATACATCTGCAACTATTTTCTTA 1748953 Query 2244 CCTCCTCTAGCAGATCTGCCGTCGACCTGGAATTCTCCCCATTCCAATGTGTCTCCATCC 2303 | ||| ||| ||||||| || || | || || || |||| || | |||||| ||| Sbjct 1748954 CATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCC 1749013 Query 2304 TTATCGACGTAGGACTTGACG--TCGGAGCTGGATTTAGCTCTTTGAATGTTAGGATGGA 2361 || || | ||| || || || || || | |||||||| ||||| || ||||||| Sbjct 1749014 TTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGA 1749073 Query 2362 AATGTGCTGACCTGGTTTGAGAGACCAAGTCGAATAGGCGTTGGTTCGTGCACTGGAATT 2421 | || | || || | | | |||||| | | ||| || ||||| ||||| Sbjct 1749074 ATTGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATT 1749132 Query 2422 TCCCTTCGAATTGCAGAAGCACGTGGAGATGAGGTTGCCCATCCTCGTGTAGTTCCCTGC 2481 ||||| ||| | ||| || || | ||| |||| || | || ||||||||| |||| Sbjct 1749133 TCCCTGTGAACTAGAGATT-ACATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGC 1749190 Query 2482 AGATCTTAATGAATTTTTTATTT--ACTGCAGTTGGGATATTTAGTATTTGGGCTAATGC 2539 | | || |||||||| |||| | | ||||| | | ||| || | || | Sbjct 1749191 ACACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAA--C 1749248 Query 2540 TTCTTCTTTGGAGATAGAGCAT-TGGGGATATGTAAGAAAATAATTTTTGGCATTAAT 2596 || ||||| | || | ||| | |||| | || ||||||||||||||| ||| || Sbjct 1749249 ATCATCTTTTGTGAGTAAACATCTTGGGAAA-GTGAGAAAATAATTTTTGCTATTTAT 1749305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8783671615650