Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_011096.1 Length=2794 Score E Sequences producing significant alignments: (Bits) Value seq519 95.1 2e-16 seq1694 86.0 1e-13 >seq519 Length=3254320 Score = 95.1 bits (104), Expect = 2e-16 Identities = 357/546 (65%), Gaps = 12/546 (2%) Strand=Plus/Plus Query 2118 GAAAATCCTATCTAAATTATTATTTAAATTATGAAATTGTAATACAAAA-TCTTTCGGTG 2176 ||| || | | | |||||| ||| ||||||||| |||||| | ||| ||||| ||| Sbjct 1748812 GAATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCTTTGGGT- 1748870 Query 2177 CTAATTCTTTAAGTATTGCAAGAGCTTC-TGGCTTACTGCCTGAGTTAATTGCTTTGGCG 2235 || ||||| | |||| | ||| | | ||| ||| | | ||||| |||| ||| Sbjct 1748871 CTTTCTCTTTTATTATTTGTAATGCTGCATCTCTTGGTGCATAA-TTAATCGCTTCAGCG 1748929 Query 2236 TAAGCGTCGTTTGCTGTCTGTTGTCCCCCTCTTGCAGATCGTCCATCGATCTGAAACTCT 2295 || | || || | | | | || || |||||| |||||| || ||||| || Sbjct 1748930 TATACATCTGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCA 1748989 Query 2296 CCCCATTCAAGGGTGTCTCCGTCTTTATCGATATAGGACTTGACG--TCGGAGCTGGATT 2353 |||| || | |||||| || || || || || || || || || || | |||| Sbjct 1748990 TCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGATT 1749049 Query 2354 TAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAAGA 2413 |||| |||| ||||||||||| || | || || ||| | | |||||| | Sbjct 1749050 TAGCATATTGAACATTTGGATGGAATTGAATGGTTCT-ATTAGGGTTTGTATGTCGAAAA 1749108 Query 2414 ATCTGTTATTTGTGCACTGGTATTTGCCTTCGAACTGGAGAAGCACGTGGAGATGAGGCT 2473 | | | ||| ||||| | |||| ||| ||||| ||| | || || | ||| || | Sbjct 1749109 ACCATTGATTGGTGCAGCAGAATTTCCCTGTGAACTAGAG-ATTACATGCAAATGTGGTT 1749167 Query 2474 CGCCATTTTCGTGTAGCTCTTTGCAGATTTTGATGTACTTCTTATTTGTTGGGGTGTCTA 2533 | || || |||||| ||| |||| | ||| ||| | || |||||| ||| || | Sbjct 1749168 C-CCGTTGCTGTGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTAGGGTAGTTGA 1749226 Query 2534 GACCTTGAAGTTGTTGGAGAGTTTCCTCTTTTGATAGAGAGCATTTAGGATATGTGAGAA 2593 | || || || | ||| || ||||||| || | ||| | || | ||||||| Sbjct 1749227 GGTTTTTGAGATGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAA 1749286 Query 2594 AGAAATTCTTGGCACTTATTTTAAA-ACGTTTTGGAGGAGCCATTTGGTCAATGTACCCC 2652 | |||| ||| | ||||| |||| | ||| | | |||||||||| ||||| || Sbjct 1749287 AATAATTTTTGCTATTTATTCTAAACATGTTATTG-GGAGCCATTTTTCAAATGT-TACC 1749344 Query 2653 GATTGA 2658 |||||| Sbjct 1749345 GATTGA 1749350 >seq1694 Length=789422 Score = 86.0 bits (94), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 18/213 (8%) Strand=Plus/Minus Query 1337 TTGTGGTTGAACCTGATTTGAACTGAGATTATGTCGTGTTGGTAGTTGAACGGT---CTC 1393 |||| ||||||| ||||| | || |||||||| | || |||||| ||| ||| Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1394 TCGTCGTGGTTGGTTATCTTGAAATACAGGGGATTTTGTATCTCCCAGATAAAAACGCCA 1453 | || || || |||||||||||||| || ||||| ||| ||||| | | |||||| Sbjct 596581 TAGT-GTCGT--GTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCA 596525 Query 1454 TT------CCGAGCTTGATGCGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATTACT 1507 || |||||| | |||||| ||||||| |||| ||||||| || || Sbjct 596524 TTGTTGCACCGAGC------CACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCT 596471 Query 1508 GCAGTTAATATGTATGAAGTATGAGCACCCGCA 1540 ||| ||||||||| | | |||| ||| || || Sbjct 596470 GCAATTAATATGTTGGTAATATGTGCAACCACA 596438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8828469940830