Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_011181.1 Length=2660 Score E Sequences producing significant alignments: (Bits) Value seq519 158 2e-35 seq1129 149 1e-32 seq1694 131 3e-27 >seq519 Length=3254320 Score = 158 bits (174), Expect = 2e-35 Identities = 182/242 (75%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 1536 AATTTAGCATTGTGGAGTGTCCACGATTTCAGAGCTGCATTTTCCTCCTTGTCTAGGAAG 1595 |||| |||||| || || |||| || |||||| |||||||||| || |||||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1596 TCTTTATAGCTAGCCCCCTCTCCAGGATTGCACAGCACGATTGATGGGATGCCACCTTTA 1655 ||||||||| || ||||| | ||| ||||| |||||||||||||||||||||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1656 ATTTGAACTGGCTTTCCG-TATTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAA 1714 |||| ||| | |||||| | |||||||| ||||| |||||||| | |||||||| Sbjct 1742372 ATTTAAAC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAA 1742430 Query 1715 TTCCTTCCAGTG----CTTTAACTTTAGATATTGCGGTGTGACATCGTCAATGACGTTGT 1770 ||| ||||| || || | ||||| ||| || | ||||| |||||||| || | Sbjct 1742431 TTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTAT 1742490 Query 1771 AT 1772 || Sbjct 1742491 AT 1742492 >seq1129 Length=1508174 Score = 149 bits (164), Expect = 1e-32 Identities = 176/237 (74%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 1536 AATTTAGCATTGTGGAGTGTCCACGATTTCAGAGCTGCATTTTCCTCCTTGTCTAGGAAG 1595 |||| ||||| ||||| ||| | || || || |||||||||| || |||||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1596 TCTTTATAGCTAGCCCCCTCTCCAGGATTGCACAGCACGATTGATGGGATGCCACCTTTA 1655 |||||||||| || || || || ||||| |||| | ||||||||||| | ||||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1656 ATTTGAACTGGCTTTCCGTATTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAAT 1715 ||| |||| || || || || |||||||| ||||| |||||||| | |||||||| Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTTG-CCCCCAATCAAA 679276 Query 1716 TCCTTCCAGTGCTTTAACTTTAGATATTGCGGTGTGACATCGTCAATGACGTTGTAT 1772 || ||| | ||||| | ||||| || || || ||||| || ||||| || ||| Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATAT 679219 >seq1694 Length=789422 Score = 131 bits (144), Expect = 3e-27 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1536 AATTTAGCATTGTGGAGTGTCCACGATTTCAGAGCTGCATTTTCCTCCTTGTCTAGGAAG 1595 |||| ||||| ||||| ||||| || || || |||||||||| | || |||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1596 TCTTTATAGCTAGCCCCCTCTCCAGGATTGCACAGCACGATTGATGGGATGCCACCTTTA 1655 ||||||||| || || || || ||||| |||| |||||||||| |||| ||| |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1656 ATTTGAACTGGCTTTCCGTATTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAAT 1715 |||||||| | || || || ||||||| ||||| |||||||| | ||||| ||| Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1716 TCCTTCCAGTGCTTTAACTTTA 1737 || ||| | ||||| | ||||| Sbjct 599692 TCTTTCTATTGCTTCATCTTTA 599671 Score = 109 bits (120), Expect = 9e-21 Identities = 115/150 (77%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 1536 AATTTA-GCATTGTGGAGTGTCCACGATTTCAGAGCTGCATTTTCCTCCTTGTCTAGGAA 1594 |||||| |||| ||||||| ||| ||||| || |||||||||| || || | ||| Sbjct 596277 AATTTATGCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAA 596218 Query 1595 GTCTTTATAGCTAGCCCCCTCTCCAGGATTGCACAGCACGATTGATGGGATGCCACCTTT 1654 ||| | ||| || || || | ||||||||| ||||||||||||||||||||||| Sbjct 596217 ATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTT 596158 Query 1655 AATTTGAACTGGCTTTCCGTATTTGCAATT 1684 ||||| ||| || || || || |||||||| Sbjct 596157 AATTTTAACGGGTTTCCCATACTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8402894827288