Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_011268.1 Length=2743 Score E Sequences producing significant alignments: (Bits) Value seq1694 87.8 3e-14 seq519 78.8 2e-11 seq3069 77.0 6e-11 >seq1694 Length=789422 Score = 87.8 bits (96), Expect = 3e-14 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 2214 CTGTCTGTTGACCTCCTCTAGCAGATCTTCCATCGATCTGAAAGAACCCCCAGTCGATGA 2273 |||| || | || || |||||||||||||||||||| ||||| ||||| || | | Sbjct 599274 CTGTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGT 599215 Query 2274 AATCTCCGTCCTTCTCGATATAGGACTTAACATCAGAGGAGGACTTAGCTCCCTGGATAT 2333 | ||||| ||||| || || || || ||||||| ||||| || || | ||| | | Sbjct 599214 AGTCTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACAC 599155 Query 2334 TTGGATGGAATTG 2346 ||||||||||||| Sbjct 599154 TTGGATGGAATTG 599142 >seq519 Length=3254320 Score = 78.8 bits (86), Expect = 2e-11 Identities = 91/123 (74%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 2224 ACCTCCTCTAGCAGATCTTCCATCGATCTGAAAGAACCCCCAGTCGATGAAATCTCCGTC 2283 || ||| ||||||||||||||||| || ||||| | || || | | | ||||| || Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTC 1743197 Query 2284 CTTCTCGATATAGGACTTAACATCAGAGGAGGACTTAGCTCCCTGGATATTTGGATGGAA 2343 ||| ||||| || || ||||||| ||||| || |||| || | |||| ||||||| Sbjct 1743198 CTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAA 1743257 Query 2344 TTG 2346 ||| Sbjct 1743258 TTG 1743260 >seq3069 Length=10854949 Score = 77.0 bits (84), Expect = 6e-11 Identities = 133/191 (70%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 1299 GCTTGCCTGAGATTGTGATTGAATTGTATTCGGAGGTGTATGATGTCCTGGTCCAGGTTG 1358 |||| |||||| ||| ||||||||||| ||| | ||||||||| ||||| ||| Sbjct 3754405 GCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTA 3754464 Query 1359 AAGGGTCTGCTCATGTGAC-TGATGACGCGGAAGTACAGAGGATTTGGGACCGTCCAGAT 1417 || ||||| ||| ||| | || | || ||| || || |||||||| || || || Sbjct 3754465 AATGGTCTCCTCTGGTGTCATGTTAAC-TTGAAATATAGGGGATTTGGTACTTCTCAAAT 3754523 Query 1418 AAAGACGCCATTGTTGAAACGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGAT 1477 | | ||| |||||||| | ||| | ||||| || ||| ||||| ||| ||| | Sbjct 3754524 ATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGT 3754583 Query 1478 TCGCGCAGTTA 1488 || ||| ||| Sbjct 3754584 TCTTGCAATTA 3754594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8668485181692