Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_011309.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq519 98.7 2e-17 >seq519 Length=3254320 Score = 98.7 bits (108), Expect = 2e-17 Identities = 338/512 (66%), Gaps = 20/512 (4%) Strand=Plus/Plus Query 2090 AAAAATCTATCTAAATTAGATTTTAAATTGTGAAATTGAAAAATATAA-TCTTTAGGAGA 2148 |||| || | | ||||| || || ||||| ||| |||| | | | || ||||| || | Sbjct 1742998 AAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTTGGGTCA 1743057 Query 2149 CTTATTCTTTAATATATTGAGGGCCTCAATTT-TTGACCCTGCGTTAATCGCTGTGGCGT 2207 || | |||| ||| | | | | ||| | |||||| | ||||||||| | | || Sbjct 1743058 -TTCTCTTTTATTATTTGTAATGT-TGAATCTCTTGACCTAGAATTAATCGCTTTAGTGT 1743115 Query 2208 AAGCGTCATTGGCTGATTGTTGTCCTCCTCGTGCAGATCTTCCATCGATCTGAAACTCTC 2267 | | || || ||| | | ||| | |||||||||||||| || ||||| || Sbjct 1743116 ATACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCAT 1743175 Query 2268 CCCAGTCGATGGTGTCTCCGTCCTTCTCCATATAGGACTTGACGTCGCTGGAGCT---TT 2324 | || || | | |||||| ||||| || || || || || || | | ||| | || Sbjct 1743176 CTCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACAT---TAGAGGTTGATT 1743232 Query 2325 TAGCTCCCTGGATGTTTGGATGGAATTGTGCTGACCTGGTTGGGGAGA-CCAGATCAAAG 2383 ||| || | ||| |||||||||| | || ||| ||| || | ||||| Sbjct 1743233 TAGAAAATTGAACATTTTGATGGAATTGAATGGTTCT-GTTAGGGTGATATATGTCAAAA 1743291 Query 2384 AATCGCTGATGTTGGCACTTGTATTTTCCTTCGAACTGGATAAGAACACGGAAGTGGGGT 2443 |||| |||| ||| | |||| ||| ||| |||||||| ||| | || || ||| Sbjct 1743292 AATCATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGT 1743351 Query 2444 TCCCCATTTTGGTGGAGCCCTCTGCGGATTGTTGTGGATTTT---TTAGAAGTTGGTGTT 2500 ||||| || ||| || || ||| | | || || ||||| || | || ||| | Sbjct 1743352 TCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTTTAGATTTGTAG--GGTAGT 1743409 Query 2501 TGGAGATTTAAGAATTGGGAAAGTGCTTCTTCTTTAGTGAGGGAGCA-CTTGGGATAAGT 2559 | ||| || || || ||| || || ||||| |||||||| || ||||||| |||| Sbjct 1743410 T-GAGGCTTTTGAGATGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGT 1743467 Query 2560 GAGAAAATAATTTTTTGCATTTAATTTAAACC 2591 ||| |||| |||||| ||||| | |||||| Sbjct 1743468 GAGGAAATGATTTTTGCTATTTATTCTAAACC 1743499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8713283554724