Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_011346.1 Length=2776 Score E Sequences producing significant alignments: (Bits) Value seq3069 111 3e-21 seq1694 96.9 6e-17 seq519 80.6 5e-12 >seq3069 Length=10854949 Score = 111 bits (122), Expect = 3e-21 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 1288 GCTTTCCTCAGGTTGTGGTTGAATTGTATCTGGACGGTGATAATGTCGTGGTTCATGTTG 1347 |||||||| |||||| ||||||||||||||||| || |||||||||| |||| Sbjct 3754405 GCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTA 3754464 Query 1348 AACGGCCTCGAGTCGTGTTCCGTTATTTTGAAATATAGGGGATTTGGTACCTCCCAAATA 1407 || || ||| | |||| |||| ||||||||||||||||||||||| || |||||| Sbjct 3754465 AATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATA 3754524 Query 1408 AAAACGCCGTTCTCCGCCTGAGTTGCAGTGATGATTTCCCCTGTGCGTGAATCCATGATT 1467 | ||| | || | || || | ||||| ||| ||| ||||| ||| ||| || Sbjct 3754525 TATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTT 3754584 Query 1468 GTGGCAGTCGATTGATAGATAATATGAGCAACCGCA 1503 | ||| | || | | || |||| |||||| || Sbjct 3754585 CTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 >seq1694 Length=789422 Score = 96.9 bits (106), Expect = 6e-17 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 1300 TTGTGGTTGAATTGTATCTGGACGGTGATAATGTCGTGGTTCATGTTGAACGGCCTCGAG 1359 |||| |||||| ||||| |||| |||||||||||||| ||||||| || || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1360 TCGTGTTCCGTTATTTTGAAATATAGGGGATTTGGTACCTCCCAAATAAAAACGCCGTTC 1419 | |||| ||||| |||||||| || |||||||||| |||||| | | ||||| || Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1420 TCCGCCTGAGTTGCAGTGATGAT-TTCCCCTGTGCGTGAATCCATGATTGTGGCAGTCGA 1478 | | ||| |||||| ||| |||||| |||| ||||||| || ||| | | Sbjct 596521 TTGCACCGAGCCACAGTGA-GATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTAA 596463 Query 1479 TTGATAGATAATATGAGCAACCGCAAT 1505 | | | ||||||| |||||| |||| Sbjct 596462 TATGTTGGTAATATGTGCAACCACAAT 596436 Score = 84.2 bits (92), Expect = 4e-13 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 1285 AGTGCTTTCCTCAGGTTGTGGTTGAATTGTATCTGGACGGTGATAATGTCGTGGTTCATG 1344 || |||||||| | || || |||||| | ||||| || || |||||| |||| || Sbjct 600235 AGGGCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTG 600176 Query 1345 TTGAACGGCCTCGAGTCGTGTTCCGTTATTTTGAAATATAGGGGATTTGGTACCTCCCAA 1404 ||||| || ||| | |||| ||||| |||||||| |||||||||||||| || ||| Sbjct 600175 TTGAATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTTGGTACTTCTCAA 600116 Query 1405 ATAAAAACG 1413 || | ||| Sbjct 600115 GTATATACG 600107 >seq519 Length=3254320 Score = 80.6 bits (88), Expect = 5e-12 Identities = 125/175 (71%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 1290 TTTCCTCAGGTTGTGGTTGAATTGTATCTGGACGGTGATAATGTCGTGGTTCATGTTGAA 1349 |||||| || |||| |||||| |||||||||| || ||||||||||| |||| || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1350 CGGCCTCGAGTCGTGTTCCGTTATTTTGAAATATAGGGGATTTGGTACCTCCCAAATAAA 1409 | ||| | || | ||||| |||||||| |||| |||||||| |||||| | | Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1410 AACGCCGTTCTCCGCCTGAGTTGCAGTGATGAT-TTCCCCTGTGCGTGAATCCAT 1463 || || || | ||||| ||||| ||| |||||| ||| | ||||||| Sbjct 1741996 TACACCATTGTTGCACTGAG-CCTAGTGA-GATGTTCCCCGGTGTGAAAATCCAT 1742048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8770872094170