Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_011348.1 Length=2630 Score E Sequences producing significant alignments: (Bits) Value seq519 154 2e-34 seq1694 149 1e-32 seq1129 149 1e-32 >seq519 Length=3254320 Score = 154 bits (170), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 1500 TCCAGTTCCTGAGAGATGCGTTTTCCTCTTTGTCCAGGAAAGCTTTATAGCTAGCACCCT 1559 |||| ||| |||||| | | |||||||| || || |||||| |||||||| ||||||| Sbjct 1742271 TCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCT 1742330 Query 1560 CACCAGGATTGCAAAGCACGATTGATGGGATTCCACCTTTAATTTGAACTGGCTTGCCGT 1619 ||| ||| ||| | |||||||||||||| ||||||||||||| ||| | || | Sbjct 1742331 CACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAA 1742390 Query 1620 ATTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCGATCAATTCTTTCCAGTG----CTTT 1675 | |||||||| ||||| |||||||| |||| |||||||||||||| || || Sbjct 1742391 ACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTAC 1742450 Query 1676 AGCTTTAGATA-GTGCGGTGCGACGTCATCAATGACGTTATA 1716 | ||||| || ||| || || || ||||||||||| ||||| Sbjct 1742451 ATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTATA 1742491 Score = 80.6 bits (88), Expect = 4e-12 Identities = 236/355 (66%), Gaps = 8/355 (2%) Strand=Plus/Plus Query 2105 TGCTTGCCTCCTCTAGCAGATCTGCCGTCGATCTGGAATTCTCCCCATTCCAGTGTA-TC 2163 ||||| | ||| ||||||||||| || || || || || || | || || | ||| || Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTA-CGTAGTC 1743191 Query 2164 TCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGG 2223 ||| ||||| |||||||| || || || | ||| | ||||||| || | || | Sbjct 1743192 TCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTG 1743251 Query 2224 ATGGAAATGTGCTGACCTGGTTGGGGAGA-CCAGATCGAAGAATCTGTTATTCTTGCATT 2282 |||||| || | || ||| ||| || | || || |||| | ||| |||| Sbjct 1743252 ATGGAATTGAATGGTTCT-GTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAAC 1743310 Query 2283 GGTATTTTCCTTCGAACTGTATGAGCACATGGAGATGAGGCTCCCCATTCTCATGAAGCT 2342 | |||| ||| ||| || || || ||||| | ||| || ||||| || || || | Sbjct 1743311 AGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTT 1743370 Query 2343 CTCTGCAGATTTTGATGAACTTCTTG--TTAACTGGTGTTTCAAGGTTTTGTAATTGGGA 2400 || |||| | | | ||||| || | | || ||| || | | ||||| | || Sbjct 1743371 CTTTGCACACTCTTATGAA-TTTTAGATTTGTAGGGTAGTTGAGGCTTTTG-AGATGATG 1743428 Query 2401 AAGTGCCTCTTCTTTTGTCAGAGAGCACTGTGGATAAGTGAGGAAATAGTTTTTG 2455 ||| || || |||||||| || || || ||| |||||||||||| |||||| Sbjct 1743429 AAGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTG 1743483 >seq1694 Length=789422 Score = 149 bits (164), Expect = 1e-32 Identities = 209/291 (72%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 1487 GCATTCTTGACAGTCCAGTTCCTGAGAGATGCGTTTTCCTCTTTGTCCAGGAAAGCTTTA 1546 ||||| | || ||||| ||| |||| | | |||||||||| ||| ||||| ||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1547 TAGCTAGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATTCCACCTTTAATTTGA 1606 ||| ||||| ||||| ||||| || | |||||||||| ||| ||| |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1607 ACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCGATCAATTCTTTC 1666 || | || || || ||||||| ||||| |||||||| |||| || ||||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1667 CAGTGCTTTAGCTTT-AGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTC 1725 | ||||| | |||| || |||| || || | ||||||||| | |||| | || Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTATCTGGTGCATC 599628 Query 1726 ATTCGAAAAGACTCGACCATTGAAGTCCAGGTGTCCACTTAGATAATTATG 1776 |||| | || ||| ||||| || ||| || |||| |||||||| Sbjct 599627 ATTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATG 599577 Score = 100 bits (110), Expect = 5e-18 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1520 TTTTCCTCTTTGTCCAGGAAAGCTTTATAGCTAGCACCCTCACCAGGATTGCAAAGCACG 1579 ||||||||||| |||| |||| || | ||| ||||| |||| ||||||| | ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1580 ATTGATGGGATTCCACCTTTAATTTGAACTGGCTTGCCGTATTTGCAATT 1629 ||||||||||| ||||||||||||| ||| || || || || |||||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 >seq1129 Length=1508174 Score = 149 bits (164), Expect = 1e-32 Identities = 174/231 (75%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 1487 GCATTCTTGACAGTCCAGTTCCTGAGAGATGCGTTTTCCTCTTTGTCCAGGAAAGCTTTA 1546 ||||| | || ||| | ||| |||| | | ||||||||||| || |||||| ||||| Sbjct 679448 GCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTA 679389 Query 1547 TAGCTAGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATTCCACCTTTAATTTGA 1606 |||| ||||| ||||| ||||| || | | ||||||||||| |||||||||| || Sbjct 679388 TAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGA 679329 Query 1607 ACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCGATCAATTCTTTC 1666 || || || || || |||||||| ||||| ||||||| | |||| ||||| |||||| Sbjct 679328 ACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTT-GCCCCCAATCAAATCTTTC 679270 Query 1667 CAGTGCTTTAGCTTT-AGATAGTGCGGTGCGACGTCATCAATGACGTTATA 1716 | ||||| | |||| || |||| || | || ||||| ||||| ||||| Sbjct 679269 TAATGCTTCATCTTTAAGTAAGTG-GGAGTTACATCATCTATGACATTATA 679220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8306898313648