Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_011583.1 Length=2797 Score E Sequences producing significant alignments: (Bits) Value seq519 89.7 9e-15 seq1694 84.2 4e-13 seq3069 77.0 6e-11 >seq519 Length=3254320 Score = 89.7 bits (98), Expect = 9e-15 Identities = 136/188 (72%), Gaps = 7/188 (4%) Strand=Plus/Plus Query 1336 TTCCGGAGGTTGTGGTTGAACCGTATCTGGAGTGTGATGATGTCGTGGTTCATGTTCCCT 1395 |||| ||| |||| |||||| ||||||||| | |||||||||||||| |||| | Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1396 GGCCTCTTGTCGTGGTTGGTG--ATTTCGAAATAGAGGGGATTTGTTATGTCCCAGGTAA 1453 | ||| | | || || ||| || | ||||||||||| ||||| || ||||| | | Sbjct 1741937 TGTCTCCTCTGGT--TTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGAT 1741994 Query 1454 AAACGCCATTCCTTGC-TTGAGGCGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGGTT 1512 | || ||||| |||| ||| || ||||| ||||||| ||| || ||||||| ||| Sbjct 1741995 ATACACCATT-GTTGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTT 1742052 Query 1513 GATGCAGT 1520 | |||| Sbjct 1742053 CCTACAGT 1742060 >seq1694 Length=789422 Score = 84.2 bits (92), Expect = 4e-13 Identities = 134/187 (72%), Gaps = 8/187 (4%) Strand=Plus/Minus Query 1345 TTGTGGTTGAACCGTATCTGGAGTGTGATGATGTCGTGGTTCATGTTCCCTGG---CCTC 1401 |||| ||||||| |||| |||| || ||||||||||| |||| ||| |||| Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1402 TTGTCGTGGTTGGTGATTTCGAAATAGAGGGGATTTGTTATGTCCCAGGTAAAAACGCCA 1461 | || || || || || | ||||||||| |||||| || ||||| | | | |||||| Sbjct 596581 TAGT-GTCGT--GTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCA 596525 Query 1462 TTCCTTGC-TTGAGGCGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGGTTGATGCAGT 1520 || |||| ||| | |||||| ||||||| |||| | ||||||| ||| |||| | Sbjct 596524 TT-GTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAAT 596466 Query 1521 CGATATG 1527 ||||| Sbjct 596465 TAATATG 596459 >seq3069 Length=10854949 Score = 77.0 bits (84), Expect = 6e-11 Identities = 133/191 (70%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 1329 CAATGCCTTCCGGAGGTTGTGGTTGAACCGTATCTGGAGTGTGATGATGTCGTGGTTCAT 1388 ||| || |||| ||||||| |||||| ||||||||| ||||||||||||| | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1389 GTTCCCTGGCCTCTTGTCGTGGTTGGTGATTTCGAAATAGAGGGGATTTGTTATGTCCCA 1448 ||| ||| ||| | | ||| || | | |||||| |||||||||| || || || Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCA 3754520 Query 1449 GGTAAAAACGCCATTCCTTGC-TTGAGGCGCAGTGATGAGTTCCCCTGTGCGAGAATCCA 1507 || | ||| |||| |||| | || || ||||| || ||| |||||| ||| || Sbjct 3754521 AATATATACGTCATT-GTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACA 3754579 Query 1508 TGGTTGATGCA 1518 | ||| |||| Sbjct 3754580 TTGTTCTTGCA 3754590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8838069581940