Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_011804.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq519 127 4e-26 >seq519 Length=3254320 Score = 127 bits (140), Expect = 4e-26 Identities = 244/355 (69%), Gaps = 6/355 (2%) Strand=Plus/Plus Query 2216 TCCTCTTGCTGATCTTCCATCGATCTGAAACTCTCCCCATTCGAGAGTGTCCCCGTCCTT 2275 ||| || || ||||||||||| || ||||| || | || || | ||| || ||||| Sbjct 1743141 TCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTT 1743200 Query 2276 GTCGATGTAGTCCTTGACATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATG 2335 |||||||| || |||| ||| ||||||||| |||| || ||||||| || Sbjct 1743201 TTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTG 1743260 Query 2336 TGCTGACCTGGTTGGG-GATACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCC 2394 | ||| | ||| |||| | ||| || |||| ||||| ||| | |||| | Sbjct 1743261 AATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTAC 1743319 Query 2395 CCTCGAATTGGATGAGCACGTGAAGATGAGGTTCCCCATTCTCGTGAAGCTCTTTGCAAA 2454 | ||| ||||| || || || | ||| |||||||| || ||| || |||||||| | Sbjct 1743320 CTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACA 1743379 Query 2455 TTTTGATGAATTTTTTATTTGTTGG--AGTTTGTAGGTTTTGGATTTGGGAAAGTGCTTC 2512 | | ||||||||| |||||| || |||| ||| ||| || || ||| || || Sbjct 1743380 CTCTTATGAATTTTAGATTTGTAGGGTAGTT--GAGGCTTTTGAGATGATGAAGAGCATC 1743437 Query 2513 CTCTTTAGTAAGAGAGCATTTTGGATAAGTCAGAAAATAATTTTTGGAATATATT 2567 ||||| || || || ||| |||| |||| || |||| ||||||| || |||| Sbjct 1743438 ATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATT 1743492 Score = 109 bits (120), Expect = 1e-20 Identities = 237/346 (68%), Gaps = 9/346 (3%) Strand=Plus/Plus Query 2226 GATCTTCCATCGATCTGAAACTCTCCCCATTCGAGAGTGTCCCCGTCCTTGTCGATGTAG 2285 ||||||||||| || ||||| || |||| || | | ||| || ||||| || ||||| Sbjct 1748966 GATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTAT 1749025 Query 2286 TCCTTGAC--ATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACC 2343 || || ||| || |||||||||| |||| || |||||||| || | | Sbjct 1749026 GATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGTTC 1749085 Query 2344 TGGTTGGGGATACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCCCTCGAATT 2403 | || ||| | | |||||| || | ||||| ||| | ||||||| ||| | Sbjct 1749086 TA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAACT 1749144 Query 2404 GGATGAGCACGTGAAGATGAGGTTCCCCATTCTCGTGAAGCTCTTTGCAAATTTTGATGA 2463 || || || || | ||| ||||||| | || ||| || ||| |||| | ||| |||| Sbjct 1749145 AGA-GATTACATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGCACACTTTTATGA 1749202 Query 2464 ATTTTTTATTTGTTGGAGT--TTGTAGGTTTTGGATTTGGGAAAGTGCTTCCTCTTTAGT 2521 |||| |||||| || || ||| ||||||| || || ||| | || ||||| || Sbjct 1749203 ATTTAAGATTTGTAGG-GTAGTTG-AGGTTTTTGAGATGACGAAGAACATCATCTTTTGT 1749260 Query 2522 AAGAGAGCATTTTGGATAAGTCAGAAAATAATTTTTGGAATATATT 2567 || | ||| |||| |||| ||||||||||||||| || |||| Sbjct 1749261 GAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATT 1749306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8658885530328