Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_011919.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq519 158 2e-35 seq1694 96.9 6e-17 seq1129 86.0 1e-13 >seq519 Length=3254320 Score = 158 bits (174), Expect = 2e-35 Identities = 268/377 (71%), Gaps = 10/377 (3%) Strand=Plus/Plus Query 2208 CTGTTTGCTGTCCCCCTCTTGCAGATCGTCCATCGATCTGAAACTCTCCCCATTCGAGGG 2267 || |||||| | || || ||||||| |||||| || ||||| || | || || | | Sbjct 1743128 CTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGT 1743187 Query 2268 TGTCTCCGTCCTTGTCGATGTAGGACTTGACATCTGAGCTTGATTTAGCTCCCTGAATGT 2327 |||||| ||||| |||||||| || || |||| ||| ||||||||| |||| | Sbjct 1743188 AGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACAT 1743247 Query 2328 TCGGATGGAAATGTACTGACCTGCTTGGG-GAGACCAGGTCGAAGAATCGCTGATTCTGG 2386 | ||||||| || | | ||| | ||| || | | ||| || |||| ||||| | Sbjct 1743248 TTTGATGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTG 1743306 Query 2387 CACTTGTATTTGCCCTCGAACTGGATGAGCACGTGCAGATGAGGTTCCCCATTCTCGTGA 2446 || | |||| || ||| ||||| || || |||| ||| |||||||| || ||| Sbjct 1743307 CAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGT 1743366 Query 2447 AGCTCTCTGCAGA-TCTTGATGAATTTTTTATTTGTTGGAGT--TTGTAGGTTTTGTAAT 2503 || ||| |||| | |||| ||||||||| |||||| || || ||| | ||||| || Sbjct 1743367 AGTTCTTTGCACACTCTT-ATGAATTTTAGATTTGTAGG-GTAGTTGAGGCTTTTGAGAT 1743424 Query 2504 TGGGAAAGTGCCTCTTCTTTAGTAAGGGAGCA-CTTGGGATATGTGAGGAAGTAGTTTTT 2562 ||| | || || ||||| || ||||| || ||||||| | |||||||| | ||||| Sbjct 1743425 GATGAA-GAGCATCATCTTTTGTGAGGGAACATCTTGGGAAA-GTGAGGAAATGATTTTT 1743482 Query 2563 GGCATTTATTCTAAACC 2579 | |||||||||||||| Sbjct 1743483 GCTATTTATTCTAAACC 1743499 Score = 118 bits (130), Expect = 2e-23 Identities = 246/355 (69%), Gaps = 11/355 (3%) Strand=Plus/Plus Query 2229 CAGATCGTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTGTCGATGT 2288 |||||| |||||| || ||||| || |||| || | |||||| ||||| || |||| Sbjct 1748964 CAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGT 1749023 Query 2289 AGGACTTGAC--ATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTACTGA 2346 | || || || ||| || |||||||||| |||| || |||||||| || | | Sbjct 1749024 ATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGT 1749083 Query 2347 CCTGCTTGGGGAGACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTGCCCTCGAA 2406 || || ||| | |||||| || | ||||| ||| | |||| || ||| Sbjct 1749084 TCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAA 1749142 Query 2407 CTGGATGAGCACGTGCAGATGAGGTTCCCCATTCTCGTGAAGCTCTCTGCAGATCTTGAT 2466 || || || || |||| ||| ||||||| | || ||| || |||||||| | || || Sbjct 1749143 CTAGA-GATTACATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGCACACTTTTAT 1749200 Query 2467 GAATTTTTTATTTGTTGGAGT--TTGTAGGTTTTGTAATTGGGAAAGTGCCTCTTCTTTA 2524 |||||| |||||| || || ||| ||||||| | || ||| | || ||||| Sbjct 1749201 GAATTTAAGATTTGTAGG-GTAGTTG-AGGTTTTTGAGATGACGAAGAACATCATCTTTT 1749258 Query 2525 GTAAGGGAGCA-CTTGGGATATGTGAGGAAGTAGTTTTTGGCATTTATTCTAAAC 2578 || || | || ||||||| | ||||| || || |||||| ||||||||||||| Sbjct 1749259 GTGAGTAAACATCTTGGGAAA-GTGAGAAAATAATTTTTGCTATTTATTCTAAAC 1749312 >seq1694 Length=789422 Score = 96.9 bits (106), Expect = 6e-17 Identities = 253/376 (67%), Gaps = 10/376 (3%) Strand=Plus/Minus Query 2208 CTGTTTGCTGTCCCCCTCTTGCAGATCGTCCATCGATCTGAAACTCTCCCCATTCGAGGG 2267 ||||||||| | | || ||||||| ||||||||| ||||| || ||||| || | | Sbjct 599274 CTGTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGT 599215 Query 2268 TGTCTCCGTCCTTGTCGATGTAGGACTTGACATCTGAGCTTGATTTAGCTCCCTGAATGT 2327 |||||| ||||| || ||||| || || |||| ||| |||||| | ||||| Sbjct 599214 AGTCTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACAC 599155 Query 2328 TCGGATGGAAATGTACTGACCTGCTTGGGGAGACCAGGTCGAAGAATCGCTGATTCTGGC 2387 | |||||||| || | | ||| | ||| | |||||| || | |||| | Sbjct 599154 TTGGATGGAATTGAATAGTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTC 599096 Query 2388 ACTTGTATTTGCCCTCGAACTGGATGAGCACGTGCAGATGAGGTTCCCCATTCTCGTGAA 2447 | | |||| || ||| | || || ||||| | ||| |||||||| || || | Sbjct 599095 AACAGAATTTTCCTGTGAATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTA 599036 Query 2448 GCTCTCTGCAGA-TCTTGATGAATTTTTTATTTGTTGG--AGTTTGTAGGTTTTGT-AAT 2503 |||| ||| | |||| |||||||| |||| | | |||| | |||||| | || Sbjct 599035 ATTCTCAGCACACTCTT-ATGAATTTGAGATTTATAGCGTAGTTGG--GGTTTTTTGAAA 598979 Query 2504 TGGGAAAGTGCCTCTTCTTTAGTAAGGGAGCA-CTTGGGATATGTGAGGAAGTAGTTTTT 2562 || ||| | || ||||| || ||||| ||||| | | ||| |||| |||||| Sbjct 598978 TGATGAAGAACATCATCTTTTAAGAGAGAGCATCTTGGTAAA-GTGTGGAAATAGTTTAA 598920 Query 2563 GGCATTTATTCTAAAC 2578 | ||||||||||||| Sbjct 598919 GCTATTTATTCTAAAC 598904 Score = 95.1 bits (104), Expect = 2e-16 Identities = 162/232 (70%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 2365 GTCGAAGAATCGCTGATTCTGGCACTTGTATTTGCCCTCGAACTGGATGAGCACGTGCAG 2424 |||||| || ||||| ||| | | |||| || |||||||| || ||||||| Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2425 ATGAGGTTCCCCATTCTCGTGAAGCTCTCTGCAGATCTTGATGAATTTTTTATTTGTTGG 2484 ||| |||||||| | ||| || |||||||| | | |||||||| |||||| | Sbjct 588189 ATGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAG 588130 Query 2485 AGTTTGTAGGTTTTGTAATTGGGAAAGTGCCTCTTCTTTAGTAAGGGAGCA-CTTGGGAT 2543 | | ||||||| | || ||| | || ||||| | || || || ||||||| Sbjct 588129 ATAGTTGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGGGAA 588070 Query 2544 ATGTGAGGAAGTAGTTTTTGGCATTTATTCTAAACCGACTGGGCGGAGCCAT 2595 | |||||||| ||||||| | ||||||||||||| ||| ||||||||| Sbjct 588069 A-GTGAGGAAATAGTTTTAGCTATTTATTCTAAAC---CTGTTCGGAGCCAT 588022 >seq1129 Length=1508174 Score = 86.0 bits (94), Expect = 1e-13 Identities = 255/384 (66%), Gaps = 37/384 (10%) Strand=Plus/Minus Query 2208 CTGTTTGCTGTCCCCCTCTTGCAGATCGTCCATCGATCTGAAACTCTCCCCATTCGAGGG 2267 ||||||||| | || || ||| ||| ||| || || ||||| || ||||| || | Sbjct 678772 CTGTTTGCTTACATCCCCTAGCATATCTTCCTTCAATTTGAAAATCACCCCAATCTACAT 678713 Query 2268 TGTCTCCG-----TCCTTGTCGATGTAGGACTTGACATCTGAGCTTGATTTAGCTCCCTG 2322 ||||||| ||||| || ||||| || || | ||| ||||||| || Sbjct 678712 AGTCTCCGATCCCTCCTTTTCAATGTATGATTTAATATC--------ATTTAGCAGATTG 678661 Query 2323 AATGTTCGGATGGAAATGT-ACTGACCTGCTTGGGGAGACCAGGTCGAAGAATCGCTGAT 2381 || || |||||| ||| |||| || ||| | |||||| || | |||| Sbjct 678660 AACATTTGGATGGTTCTGTTACTG---TG-TTGT-------ATGTCGAAAAACCTTTGAT 678612 Query 2382 TCTGGCACTTGTATTTGCCCTCGAACTGGATGAGCACGTGCAGATGAGGTTCCCCA---- 2437 | ||| | |||| || |||||||| || ||||||| ||| |||||||| Sbjct 678611 TAGTGCATCAGAATTTCCCTATGAACTGGAGAAGTACGTGCAAATGTGGTTCCCCGGCCC 678552 Query 2438 -TTCTCGTGAAGCTCTCTGCAGATCTTGATGAATTTTTTATTTGTTGGAGT--TTGTAGG 2494 || | | | || | | |||| || | ||||| ||| |||||| || || ||| ||| Sbjct 678551 GTTGTTGCGTAGTTTTATGCACATTCTTATGAAGTTTAGATTTGTAGG-GTAGTTG-AGG 678494 Query 2495 TTTTGTAATTGGGAAAGTGCCTCTTCTTTAGTAAGGGAGCA-CTTGGGATATGTGAGGAA 2553 ||||| || ||| | || || ||||| | || || || |||| || | ||||||| Sbjct 678493 TTTTGAGATGATGAA-GAGCATCATCTTTTGAGAGAGAACATCTTGAGAAAC-TGAGGAA 678436 Query 2554 GTAGTTTTTGGCATTTATTCTAAA 2577 ||||||||| |||||||||||| Sbjct 678435 ATAGTTTTTGCTATTTATTCTAAA 678412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8694084251996