Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_012041.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq519 95.1 2e-16 >seq519 Length=3254320 Score = 95.1 bits (104), Expect = 2e-16 Identities = 232/344 (67%), Gaps = 7/344 (2%) Strand=Plus/Plus Query 2236 GACCTTCCGTCGATCTGAAATTGGCCCCATTCGAGAATGTCCCCGTCCTTGTCGATGTAG 2295 || ||||| || || ||||| | |||| || | | ||| || ||||| || ||||| Sbjct 1748966 GATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTAT 1749025 Query 2296 GACTTGACG--TCGGAGCTGGTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACC 2353 || || || || || | | |||||| |||| || |||||||| || | | Sbjct 1749026 GATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGTTC 1749085 Query 2354 TGTTTGGGGATGTGAGGTCGAAGAATCTGTTGTTTTG-GCACTTGTATTTTCCTTCGAAT 2412 | || ||| ||| | |||||| || | ||| || | ||| | |||| ||| ||| Sbjct 1749086 TATTAGGGTTTGT-ATGTCGAAAAACCA-TTGATTGGTGCAGCAGAATTTCCCTGTGAAC 1749143 Query 2413 TGGATGAGAACATGCAGGTGAGGAGTCCCATCTTCGTGGAGTTCTCTGCAGATTCTAATG 2472 | || || ||||||| || || |||| | ||| ||||||||||| | | | ||| Sbjct 1749144 TAGA-GATTACATGCAAATGTGGT-TCCCGTTGCTGTGTAGTTCTCTGCACACTTTTATG 1749201 Query 2473 AATTTTTTATTAGTAGGGGTTTGTAGGTTTAGGAATTGGGAAAGTGCTTCTTCTTTAGTG 2532 ||||| ||| |||||| | |||||| || || ||| | || ||||| ||| Sbjct 1749202 AATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTGTG 1749261 Query 2533 AGGGAGCACTTTGGATAAGTGAGAAAATAATTTTTGGCATTTAT 2576 || | || |||| |||||||||||||||||||| |||||| Sbjct 1749262 AGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTAT 1749305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8713283554724