Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_012118.1 Length=2764 Score E Sequences producing significant alignments: (Bits) Value seq519 113 8e-22 seq1129 95.1 2e-16 seq2957 93.3 7e-16 seq1694 87.8 3e-14 >seq519 Length=3254320 Score = 113 bits (124), Expect = 8e-22 Identities = 242/354 (68%), Gaps = 6/354 (2%) Strand=Plus/Plus Query 2236 CCTCTAGCAGATCTTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTC 2295 || ||||||||||||||||| || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2296 TCCAGATAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGT 2355 || | || || || || | ||| ||||||||| |||| || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2356 GCTGACCTGGTTGGGGAGA-CCAGGTCGAAGAATCGCTGATTTTGGCACCTGTATTTCCC 2414 | || ||| ||| || | ||| || |||| ||||| ||| | | |||| || Sbjct 1743262 ATGGTTCT-GTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2415 TTCGAACTGGATGAGCACGTGCAGATGAGGGCTCCCATCTTCGTGGAGTTCCCTGCAGA- 2473 | ||| ||||| || || |||| ||| || ||| | ||| ||||| |||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2474 TCTTGATGAATTTTTTATTGGTGGGTGTATCTAGGGCTTGT-ATTTGGGAAAGTGCTTCT 2532 |||| ||||||||| ||| || || ||| | ||||| | | || ||| || || Sbjct 1743381 TCTT-ATGAATTTTAGATTTGTAGG-GTAGTTGAGGCTTTTGAGATGATGAAGAGCATCA 1743438 Query 2533 TCTTTAGTAAGAGAGCAGTGTGGGTAAGTGAGGAAATAATTTCTGGCATATATT 2586 ||||| || || || || |||| |||||||||||| |||| || || |||| Sbjct 1743439 TCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATT 1743492 Score = 96.9 bits (106), Expect = 6e-17 Identities = 131/177 (74%), Gaps = 7/177 (4%) Strand=Plus/Plus Query 1303 TTTCCTCAGGTTGTGATTGAACTGTATCTGGACGGTTATGATGTCTTGGTTCATGGTGAA 1362 |||||| || |||| ||||| |||||||||| ||||||||| ||||| || | || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1363 TGGCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAATCTCCCA--GATA 1420 | | || | |||| |||||||||||||||||||| |||| | | ||||| |||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1421 AACACGCCATTCTCTGC-TTGAGCTGCAGTGATGAGTTCCCCGGTGCGTGAATCCAT 1476 ||| ||||| | ||| ||||| ||||| ||||||||||| | ||||||| Sbjct 1741996 TACA--CCATTGT-TGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 Score = 89.7 bits (98), Expect = 9e-15 Identities = 268/403 (67%), Gaps = 13/403 (3%) Strand=Plus/Plus Query 2236 CCTCTAGCAGATCTTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTC 2295 || ||| ||||||||||||| || ||||| || |||| || | |||||| ||||| Sbjct 1748957 CCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTT 1749016 Query 2296 TCCAGATAGGACTTGA--CGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAAT 2353 || | || || || | | || || |||||||||| |||| || |||||||| | Sbjct 1749017 TCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATT 1749076 Query 2354 GTGCTGACCTGGTTGGGGAGACCAGGTCGAAGAATCGCTGATTTTGGCACCTGTATTTCC 2413 | | || || ||| | |||||| || | ||||| ||| | | |||||| Sbjct 1749077 GAATGGTTCT-ATTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCC 1749135 Query 2414 CTTCGAACTGGATGAGCACGTGCAGATGAGGGCTCCCATCTTCGTGGAGTTCCCTGCAGA 2473 || ||||| || || || |||| ||| || |||| | ||| ||||| ||||| | Sbjct 1749136 CTGTGAACTAGA-GATTACATGCAAATG-TGGTTCCCGTTGCTGTGTAGTTCTCTGCACA 1749193 Query 2474 TCTTGATGAATTTTTTATTGGTGGGTGTA-TCTAGGGCTTGTATTTGGGAAAGTGCTTCT 2532 || |||||||| ||| || || ||| | ||| || | || ||| | || Sbjct 1749194 CTTTTATGAATTTAAGATTTGTAGG-GTAGTTGAGGTTTTTGAGATGACGAAGAACATCA 1749252 Query 2533 TCTTTAGTAAGAGAGCAGTGTGGGTAAGTGAGGAAATAATTTCTGGCATATATTTGAAAA 2592 ||||| || || | || |||| ||||||| ||||||||| || || |||| ||| Sbjct 1749253 TCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCTAAAC 1749312 Query 2593 CGCTTAGGAGGAGCCATTGACTTGGTCAAATGGGTACCAATTG 2635 ||| ||||||||| || |||||| | |||| |||| Sbjct 1749313 ATGTTATTGGGAGCCATT---TT--TCAAAT-GTTACCGATTG 1749349 >seq1129 Length=1508174 Score = 95.1 bits (104), Expect = 2e-16 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 1303 TTTCCTCAGGTTGTGATTGAACTGTATCTGGACGGTTATGATGTCTTGGTTCATGGTGAA 1362 |||||| | ||||| |||||||||||||||| |||||||| ||| | || |||| Sbjct 693775 TTTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAA 693716 Query 1363 TGGCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAATCTCCCAGATAAA 1422 || || | ||||| | |||||||||| ||||| ||||| ||| || ||||| || | Sbjct 693715 CGGTCTCCTCTGGTGTTGTGTTATCTTGTAATAG-GGGGAATTTAAACTTCCCAAGTATA 693657 Query 1423 CACGCCATTCTCTGCTTGAGCTGCAGTGATGAGTTCCCCGGTGCGTGAATCCAT 1476 |||||||| | | | || ||| ||| || | |||||| || ||||||| Sbjct 693656 TACGCCATTATTTCACTAAGTCGCAATGA-GATATTCCCGGTACGAAAATCCAT 693604 >seq2957 Length=4215098 Score = 93.3 bits (102), Expect = 7e-16 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 1298 AACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGGACGGTTATGATGTCTTGGTTCATG 1357 || |||||| | ||||||| |||||||||||||||| | |||||||| | || || Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1358 GTGAATGGCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAATCTCCCAG 1417 |||||| || | ||||| |||||||||||||||| || ||||| | | ||| || Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAG 1238868 Query 1418 ATAAACACGCCATTCTCTGC-TTGAGCTGCAGTGATGAGTTCCCCGGTGCGTGAATCCAT 1476 || | || |||| | ||| ||||| ||| ||| | | | | ||||| ||||||| Sbjct 1238869 GTATATACTTCATTGT-TGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCAT 1238927 >seq1694 Length=789422 Score = 87.8 bits (96), Expect = 3e-14 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 1301 GCTTTCCTCAGGTTGTGATTGAACTGTATCTGGACGGTTATGATGTCTTGGTTCATGGTG 1360 |||||||| | || || ||||||| ||||| || ||||||||| |||| || || Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1361 AATGGCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAATCTCCCAGATA 1420 ||||| || | ||||| ||||||||||||||||||||||||| | | || || || Sbjct 600172 AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTTGGTACTTCTCAAGTA 600113 Query 1421 AACACGCCATT 1431 | ||| |||| Sbjct 600112 TATACGTCATT 600102 Score = 84.2 bits (92), Expect = 4e-13 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 1313 TTGTGATTGAACTGTATCTGGACGGTTATGATGTCTTGGTTCATGGTGAATGGCCTGTTG 1372 |||| ||||||||||| |||| ||| ||||| ||||| || ||||||| | | Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1373 TGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAATCTCCCAGATAAACACGCCATTC 1432 | ||| |||||||||||||||||| ||||| | | ||||| | | |||||||| Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1433 TCTGC-TTGAGCTGCAGTGATGAGTTCCCCGGTGCGTGAATCCAT 1476 | ||| |||| |||||| ||||||| |||| ||||||| Sbjct 596521 T-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8732473529730