Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_012137.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq519 96.9 6e-17 >seq519 Length=3254320 Score = 96.9 bits (106), Expect = 6e-17 Identities = 247/371 (67%), Gaps = 9/371 (2%) Strand=Plus/Plus Query 2229 GCTGATCTTCCATCGATCTGAAACTCTCCCCACTCGAGAGTGTCCCCGTCCTTGTCGATG 2288 || ||||||||||| || ||||| || | || || | ||| || ||||| |||||| Sbjct 1743148 GCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTTTCGATG 1743207 Query 2289 TAGGCCTTGACATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGAC 2348 || | || |||| ||| ||||||||| |||| || ||||||| || | Sbjct 1743208 TATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGAATGGTT 1743267 Query 2349 CTGGTTGGG-GATACCAGGTCGAAGAATCTGTTATTCGTGCAGACGAATTTGCCCTCGAA 2407 ||| | ||| |||| | ||| || |||| | ||| ||||| |||||| || ||| Sbjct 1743268 CTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACCTGTGAA 1743326 Query 2408 CTGGATGAGCACATGGAGATGAGGGCTCCCATCTTCGTGTAACTCTCTGCAGAGTTTGAT 2467 ||||| || ||||| | ||| || ||| | ||||| ||| |||| | | | || Sbjct 1743327 GTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTAT 1743386 Query 2468 ATATTTTTTATTCG-AGGGTGTGTTGATGGCTTGAATTTGGGAAAGTGCTTCCTCTTTAG 2526 ||||| ||| | ||||| ||||| | || | || ||| || || ||||| | Sbjct 1743387 GAATTTTAGATTTGTAGGGT-AGTTGAGGCTTTTGAGATGATGAAGAGCATCATCTTTTG 1743445 Query 2527 TGAGTGAGCACTGTGGATAAGTGATGAAATAGTTTTTGGCTTGTACTTTAAAACGTTTGG 2586 |||| || || ||| |||||| ||||| |||||| | || | |||| | | Sbjct 1743446 TGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATTCTAAACCTT---- 1743501 Query 2587 GGGGAGCCATT 2597 |||||||||| Sbjct 1743502 -GGGAGCCATT 1743511 Score = 91.5 bits (100), Expect = 3e-15 Identities = 246/369 (67%), Gaps = 7/369 (2%) Strand=Plus/Plus Query 2232 GATCTTCCATCGATCTGAAACTCTCCCCACTCGAGAGTGTCCCCGTCCTTGTCGATGTAG 2291 ||||||||||| || ||||| || |||| || | | ||| || ||||| || ||||| Sbjct 1748966 GATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTAT 1749025 Query 2292 GCCTTGA--CATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACC 2349 | || | |||| || |||||||||| |||| || |||||||| || | | Sbjct 1749026 GATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGTTC 1749085 Query 2350 TGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCAGACGAATTTGCCCTCGAACT 2409 | || ||| | | |||||| || | | ||| |||||| |||||| || ||||| Sbjct 1749086 T-ATTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAACT 1749144 Query 2410 GGATGAGCACATGGAGATGAGGGCTCCCATCTTCGTGTAACTCTCTGCAGAGTTTGATAT 2469 || || ||||| | ||| || |||| | ||||| |||||||| | ||| || Sbjct 1749145 AGA-GATTACATGCAAATG-TGGTTCCCGTTGCTGTGTAGTTCTCTGCACACTTTTATGA 1749202 Query 2470 ATTTTTTATTCG-AGGGTGTGTTGATGGCTTGAATTTGGGAAAGTGCTTCCTCTTTAGTG 2528 |||| ||| | ||||| ||||| | || | || ||| | || ||||| ||| Sbjct 1749203 ATTTAAGATTTGTAGGGT-AGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTGTG 1749261 Query 2529 AGTGAGCACTGTGGATAAGTGATGAAATAGTTTTTGGCTTGTACTTTAAAACGTTTGGGG 2588 ||| | || ||| |||||| ||||| |||||| | || | |||| || | Sbjct 1749262 AGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCTAAACATGTTATTG 1749321 Query 2589 GGAGCCATT 2597 ||||||||| Sbjct 1749322 GGAGCCATT 1749330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8719683322300