Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_012206.1 Length=2784 Score E Sequences producing significant alignments: (Bits) Value seq519 100 5e-18 seq1694 89.7 9e-15 seq1129 86.0 1e-13 >seq519 Length=3254320 Score = 100 bits (110), Expect = 5e-18 Identities = 268/400 (67%), Gaps = 11/400 (3%) Strand=Plus/Plus Query 2272 TCCTCTTGCAGATCTCCCATCGATCTGGAACTCTCCCCATTCGAGTGTA-TCTCCATCCT 2330 ||| || |||||||| ||||| || || || || | || || | ||| ||||| |||| Sbjct 1743141 TCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTAC-GTAGTCTCCCTCCT 1743199 Query 2331 TGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTTGGATGGAAAT 2390 | |||||||| || || || | ||| | ||||||| || | ||| ||||||| | Sbjct 1743200 TTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATT 1743259 Query 2391 GTGCTGACCTGGTTGGG-GACACCAGGTCGAAGAATCTCTGATTTTGGCAGTTGTATTTG 2449 | | ||| | ||| || | | ||| || |||| ||||| ||| | |||| Sbjct 1743260 GAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTA 1743318 Query 2450 CCTTCGAACTGCAGAAGCACGTGAAGATGAGGCTGGCCATCCTCGTGAAGTTCTCTGCAG 2509 ||| ||| || | ||| || || | ||| || | || | ||| |||||| |||| Sbjct 1743319 CCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCAC 1743378 Query 2510 A-TCTTGATATATTTTTTATTCGTTGGGGTTTCTAGTTTTAGAAGTTGCTCTAGGGCTTC 2568 | |||| || ||||| ||| || ||| | || || || || | || || || Sbjct 1743379 ACTCTT-ATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATC 1743437 Query 2569 TTCTTTAGAAATAGAGCATTTTGGGAAAGTGAGGAAGTAGTTTTTGGAATTTATTCTAAA 2628 ||||| | | || ||| |||||||||||||||| | |||||| |||||||||||| Sbjct 1743438 ATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATTCTAAA 1743497 Query 2629 TTTCTTTGGAGGAGCCATATGGTCAACTAGCACCAATTGA 2668 | ||| |||||||| | | || | ||||||||| Sbjct 1743498 ---CCTTG--GGAGCCATTTTTTAAAATGTTACCAATTGA 1743532 >seq1694 Length=789422 Score = 89.7 bits (98), Expect = 9e-15 Identities = 139/194 (72%), Gaps = 20/194 (10%) Strand=Plus/Minus Query 1347 TTGTGGTTGAACCTGATTTGTA-CTGTGATTATGTCGTGTTGGTAGTTGAACGGT---CT 1402 |||| ||||||| ||||| | || | || |||||||| | || |||||| ||| || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCT-ATAATGTCGTGGTTGTTGTTGAATGGTGTCCT 596583 Query 1403 CTCGTCGTGGTTGGTTATCTTGAAATACAGGGGATTTTGTATCTCCCAGATAAAAACGCC 1462 || || || || |||||||||||||| || ||||| ||| ||||| | | ||||| Sbjct 596582 CTAGT-GTCGT--GTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCC 596526 Query 1463 ATT------CCGAGCTTGATGCGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTAC 1516 ||| |||||| | |||||| ||||||| |||| ||||||| ||| | Sbjct 596525 ATTGTTGCACCGAGC------CACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCC 596472 Query 1517 TGCAGTTAATATGT 1530 |||| ||||||||| Sbjct 596471 TGCAATTAATATGT 596458 >seq1129 Length=1508174 Score = 86.0 bits (94), Expect = 1e-13 Identities = 157/229 (69%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 2416 GTCGAAGAATCTCTGATTTTGGCAGTTGTATTTGCCTTCGAACTGCAGAAGCACGTGAAG 2475 |||||| || || ||||| ||| | |||| ||| |||||| ||||| ||||| | Sbjct 678628 GTCGAAAAACCTTTGATTAGTGCATCAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 678569 Query 2476 ATGAGGCTGGCCATCC-----TCGTGAAGTTCTCTGCAGATCTTGATATATTTTTTATTC 2530 ||| || | || || | | | |||| | |||| || | || | ||| ||| Sbjct 678568 ATGTGGTTCCCCGGCCCGTTGTTGCGTAGTTTTATGCACATTCTTATGAAGTTTAGATTT 678509 Query 2531 GTTGGGGTTTCTAGTTTTAGAAGTTGCTCTAGGGCTTCTTCTTTAGAAATAGAGCATTTT 2590 || ||| | || ||| || | || | || || || ||||| || | ||| ||| || Sbjct 678508 GTAGGGTAGTTGAGGTTTTGA-GATGATGAAGAGCATCATCTTTTGAGAGAGAACATCTT 678450 Query 2591 GGGAAAGTGAGGAAGTAGTTTTTGGAATTTATTCTAAATTTCTTTGGAG 2639 | |||| ||||||| ||||||||| ||||||||||||| | || |||| Sbjct 678449 GAGAAACTGAGGAAATAGTTTTTGCTATTTATTCTAAATATGTTGGGAG 678401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8796471137130