Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_012481.1 Length=2597 Score E Sequences producing significant alignments: (Bits) Value seq1129 140 5e-30 seq1694 120 5e-24 seq519 113 7e-22 >seq1129 Length=1508174 Score = 140 bits (154), Expect = 5e-30 Identities = 270/393 (69%), Gaps = 14/393 (4%) Strand=Plus/Minus Query 1453 AATTTAGCATTTTTGATAGTCCACTCCCTTAGTGATGCATTTTCCTCTTTGTTAAGGAAA 1512 |||| ||||||| || ||| | | | | || | ||||||||||||| | |||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1513 CATATATAACTGCTCCCCTCTCCTGGATTGCACAGCACGATTGATGGTATGCCACCTTTA 1572 | |||| | || || |||||||| |||| | ||||||||| | | ||||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1573 ATTTGAACTGGCTTGCCGTACTTACAGTTTGATTGCCAGTCCCTTTGGGCCCCTATGAGC 1632 ||| |||| || || || ||||| || || |||||| | | ||| | |||| || | Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAAA 679276 Query 1633 TCTTTCCAGTGCTTTAGCTTTAAATAATGCGGAGCTATGTCATCAATGACGTTATACTCC 1692 |||||| | ||||| | |||||| ||| |||| || ||||| ||||| ||||| Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTT 679216 Query 1693 ACATCATTCGAGAAGAC--CTTGGAATTGAAGTCGAGGTGA---CCACTCAAATAATTAT 1747 ||||||| ||| || || | ||||| || | |||| || | | ||||||| Sbjct 679215 GCATCATTGTGGAATACTGATTTG--TTGAAATCTAAGTGATGGCCGTTAATGTAATTAT 679158 Query 1748 GTGGGCCTAAAGCACGTGCCCACATGGTTTTGCCTGTTCGTGAACCT---CCTTCAATTA 1804 | || | | | || ||| | | ||||||||| |||| || | |||||||| | Sbjct 679157 GACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTCG---ACTTGGGCCTTCAATGA 679101 Query 1805 TGATACTAATAGGTCTCTCCGGCCGCGCAGCGG 1837 | ||||| ||||||| || |||| |||| ||| Sbjct 679100 TTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq1694 Length=789422 Score = 120 bits (132), Expect = 5e-24 Identities = 210/300 (70%), Gaps = 8/300 (3%) Strand=Plus/Minus Query 1453 AATTTAGCATTTTTGATAGTCCACTCCCTTAGTGATGCATTTTCCTCTTTGTTAAGGAAA 1512 |||| ||||||| || ||||| | | | || | |||||||||||| | ||||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1513 CATATATA--ACTGCTCCCCTCTCCTGGATTGCACAGCACGATTGATGGTATGCCACCTT 1570 | |||| || || || || |||||||| |||| |||||||||| ||| ||| || Sbjct 599812 TCTTTATAGGAC-GCACCT-TCACCTGGATTACACAATACGATTGATGAGATGACACATT 599755 Query 1571 TAATTTGAACTGGCTTGCCGTACTTACAGTTTGATTGCCAGTCCCTTTGGGCCCCTATGA 1630 |||||||||| | || || ||||| || | |||||| || |||| |||| || | Sbjct 599754 TAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAA 599695 Query 1631 GCTCTTTCCAGTGCTTTAGCTTTAAATAATGCGGAGCTATGTCATCAATGACGTTATACT 1690 |||||| | ||||| | |||||| ||| |||||| ||||||||| | |||| Sbjct 599694 ATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTATCTG 599635 Query 1691 CCACATCATTCGAGAAGAC--CTTGGAATTGAAGTCGAGGTGACCACTCAAATAATTATG 1748 |||||||| |||| || || | ||||| || |||||| || | |||||||| Sbjct 599634 GTGCATCATTCTAGAATACTGATTTG--TTGAAATCATAGTGACCGCTTATGTAATTATG 599577 Score = 80.6 bits (88), Expect = 4e-12 Identities = 116/160 (73%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 1453 AATTTA-GCATTTTTGATAGTCCACTCCCTTAGTGATGCATTTTCCTCTTTGTTAAGGAA 1511 |||||| |||| || || | ||| | | | || | ||||||||||||| | | ||| Sbjct 596277 AATTTATGCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAA 596218 Query 1512 ACATATATAAC-TGCTCCCCTCTCCTGGATTGCACAGCACGATTGATGGTATGCCACCTT 1570 | | | || ||| || || | | ||||||||| ||||||||||| |||||||||| Sbjct 596217 ATCTCTGTAGGATGCACCT-TCACTTAGATTGCACAATACGATTGATGGGATGCCACCTT 596159 Query 1571 TAATTTGAACTGGCTTGCCGTACTTACAGTTTGATTGCCA 1610 |||||| ||| || || || ||||| || || |||||| Sbjct 596158 TAATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCCA 596119 >seq519 Length=3254320 Score = 113 bits (124), Expect = 7e-22 Identities = 184/262 (70%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 1453 AATTTAGCATTTTTGATAGTCCACTCCCTTAGTGATGCATTTTCCTCTTTGTTAAGGAAA 1512 |||| |||||||| | |||| | | | || | | |||||||||| || | |||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1513 CATATATAAC-TGCTCCCCTCTCCTGGATTGCACAGCACGATTGATGGTATGCCACCTTT 1571 | |||| ||| ||| || | | ||| ||||| ||||||||||| ||||||||||| Sbjct 1742312 TCTTTATAGGATGCACCC-TCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTT 1742370 Query 1572 AATTTGAACTGGCTTGCCGTACTTACAGTTTGATTGCCAGTCCCTTTGGGCCCCTATGAG 1631 ||||| ||| | || | |||| || || |||||| || |||| |||| || | Sbjct 1742371 AATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAA 1742430 Query 1632 CTCTTTCCAGTG----CTTTAGCTTTAAATAATGCGGAGCTATGTCATCAATGACGTTAT 1687 |||||||| || || | |||||| || ||||||| ||||||||||| |||| Sbjct 1742431 TTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTAT 1742490 Query 1688 ACTCCACATCATTCGAGAAGAC 1709 | ||||||| |||| || Sbjct 1742491 ATGTTGCATCATTGCAGAATAC 1742512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8201302148644