Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_012492.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq519 132 8e-28 seq1694 98.7 2e-17 seq1129 80.6 5e-12 >seq519 Length=3254320 Score = 132 bits (146), Expect = 8e-28 Identities = 253/361 (70%), Gaps = 10/361 (3%) Strand=Plus/Plus Query 2230 CCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTC 2289 || || |||||||||||||| || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2290 TCCAGATAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGT 2349 || | || || || || | ||| ||||||||| |||| || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2350 GCTGACCTGGTTGGG-GATACCAGGTCGAAGAATCTGTTATTCGTGCACTGGTATTTCCC 2408 | ||| | ||| |||| | ||| || |||| | ||| ||||| | |||| || Sbjct 1743262 ATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2409 TTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTCTCATGAAGTTCCCTGCAGAC 2468 | ||| ||||| || || || | ||| |||||||| || || ||||| |||| || Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2469 TCTTATGTATTTTTTGTTTACTGGGGT--TTGTAGGTTTTCTAATTGTGAGAGGGCTTCT 2526 ||||||| | |||| | || | |||| ||| | |||| || ||| || || || Sbjct 1743381 TCTTATG-AATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGA-AGAGCATCA 1743438 Query 2527 TCTTTAGTTAGAGAGCAT-TTGGGATAAGTGAGAAAATAGTTTTTTGC-ATTTAATCTAA 2584 ||||| || || || ||| |||||| ||||||| |||| | ||||||| ||||| ||||| Sbjct 1743439 TCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAAT-GATTTTTGCTATTTATTCTAA 1743496 Query 2585 A 2585 | Sbjct 1743497 A 1743497 Score = 107 bits (118), Expect = 3e-20 Identities = 243/354 (69%), Gaps = 11/354 (3%) Strand=Plus/Plus Query 2237 CAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGAT 2296 ||||||||||||| || ||||| || |||| || | |||||| ||||| || | | Sbjct 1748964 CAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGT 1749023 Query 2297 AGGACTTGACG--TCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGA 2354 | || || || || || |||||||||| |||| || |||||||| || | Sbjct 1749024 ATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGT 1749083 Query 2355 CCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCACTGGTATTTCCCTTCGAA 2414 || || ||| | | |||||| || | | ||| ||||| | |||||||| ||| Sbjct 1749084 TCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAA 1749142 Query 2415 CTGGATGAGCACGTGAAGATGAGGTTCCCCATTCTCATGAAGTTCCCTGCAGACTCTTAT 2474 || || || || || | ||| ||||||| | || || ||||| ||||| ||| |||| Sbjct 1749143 CTAGA-GATTACATGCAAATGTGGTTCCCGTTGCTG-TGTAGTTCTCTGCACACTTTTAT 1749200 Query 2475 GTATTTTTTGTTTACTGGGGT--TTGTAGGTTTTCTAATTGTGAGAGGGCTTCTTCTTTA 2532 | |||| ||| | |||| ||| ||||||| | || || | || ||||| Sbjct 1749201 GAATTTAAGATTTG-TAGGGTAGTTG-AGGTTTTTGAGATGACGAAGAACATCATCTTTT 1749258 Query 2533 GTTAGAGAGCAT-TTGGGATAAGTGAGAAAATAGTTTTTTGCATTTAATCTAAA 2585 || || | ||| |||||| ||||||||||||| ||||| ||||| |||||| Sbjct 1749259 GTGAGTAAACATCTTGGGA-AAGTGAGAAAATAATTTTTGCTATTTATTCTAAA 1749311 >seq1694 Length=789422 Score = 98.7 bits (108), Expect = 2e-17 Identities = 239/356 (67%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 2233 CTTGCAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCC 2292 || ||||||||||||||||| ||||| || ||||| || | | |||||| ||||| || Sbjct 599257 CTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTCA 599198 Query 2293 AGATAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCT 2352 | || || || || | ||| |||||| | ||||| | |||||||| || Sbjct 599197 ATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATTGAATA 599138 Query 2353 GACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCACTGGTATTTCCCTTCG 2412 | ||| | ||| | | |||||| || || | || || || | |||| ||| | Sbjct 599137 GTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTCAACAGAATTTTCCTGTG 599079 Query 2413 AACTGGATGAGCACGTGAAGATGAGGTTCCCCATTCTCATGAAGTTCCCTGCAGACTCTT 2472 || | || || ||||| | ||| |||||||| || | | ||| | ||| |||||| Sbjct 599078 AATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTAATTCTCAGCACACTCTT 599019 Query 2473 ATGTATTTTTTGTTTACTGGGGT--TTGTAGGTTTTCTAATTG-TGAGAGGGCTTCTTCT 2529 ||| |||| |||| | | || ||| | |||| || || ||| || | || ||| Sbjct 599018 ATGAATTTGAGATTTA-TAGCGTAGTTGGGGTTTTTTGAAATGATGA-AGAACATCATCT 598961 Query 2530 TTAGTTAGAGAGCATTTGGGATAAGTGAGAAAATAGTTTTTTGCATTTAATCTAAA 2585 || ||||||||| | || ||||| | ||||||||| ||||| |||||| Sbjct 598960 TTTAAGAGAGAGCATCTTGGTAAAGTGTGGAAATAGTTTAAGCTATTTATTCTAAA 598905 >seq1129 Length=1508174 Score = 80.6 bits (88), Expect = 5e-12 Identities = 155/221 (70%), Gaps = 12/221 (5%) Strand=Plus/Minus Query 2373 GTCGAAGAATCTGTTATTCGTGCACTGGTATTTCCCTTCGAACTGGATGAGCACGTGAAG 2432 |||||| || || | ||| ||||| | |||||||| |||||||| || ||||| | Sbjct 678628 GTCGAAAAACCTTTGATTAGTGCATCAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 678569 Query 2433 ATGAGGTTCCCCA-----TTCTCATGAAGTTCCCTGCAGACTCTTATGTATTTTTTGTTT 2487 ||| |||||||| || | | |||| |||| | ||||||| | ||| ||| Sbjct 678568 ATGTGGTTCCCCGGCCCGTTGTTGCGTAGTTTTATGCACATTCTTATGAAGTTTAGATTT 678509 Query 2488 ACTGGGGT--TTGTAGGTTTTCTAATTGTGAGAGGGCTTCTTCTTTAGTTAGAGAGCAT- 2544 | |||| ||| ||||||| || ||| || || || ||||| | ||||| ||| Sbjct 678508 G-TAGGGTAGTTG-AGGTTTTGAGATGATGA-AGAGCATCATCTTTTGAGAGAGAACATC 678452 Query 2545 TTGGGATAAGTGAGAAAATAGTTTTTTGCATTTAATCTAAA 2585 ||| || || |||| ||||||||||| ||||| |||||| Sbjct 678451 TTGAGA-AACTGAGGAAATAGTTTTTGCTATTTATTCTAAA 678412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8697284135784