Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_012553.1 Length=2609 Score E Sequences producing significant alignments: (Bits) Value seq519 118 2e-23 seq1694 109 9e-21 >seq519 Length=3254320 Score = 118 bits (130), Expect = 2e-23 Identities = 148/203 (73%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 1534 CATTCTCCTCTTTGTTGAGGAAGTCTTTATAACTAGCCCCCTCGCCTGGATTGCACAGCA 1593 |||| ||||| || | ||||| |||||||| || ||||| | | ||| ||||| | Sbjct 1742289 CATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCTCACTTAGATAGCACAATA 1742348 Query 1594 CGATTGATGGTATCCCGCCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCC 1653 |||||||||| || || |||||||||| ||| | || | | | || || || |||| Sbjct 1742349 CGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCC 1742408 Query 1654 AGTCCCTTTGGGCCCCAATCAACTCTTTCCAATG----CTTTAACTTTAGATAATGCGGA 1709 | || |||| |||||||||| ||||||||||| || | ||||| || ||| Sbjct 1742409 AATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGA 1742468 Query 1710 GCGACATCATCAATGACGTTATA 1732 || |||||||||||||| ||||| Sbjct 1742469 GCTACATCATCAATGACATTATA 1742491 >seq1694 Length=789422 Score = 109 bits (120), Expect = 9e-21 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 1534 CATTCTCCTCTTTGTTGAGGAAGTCTTTATAACTAGCCCCCTCGCCTGGATTGCACAGCA 1593 |||| ||||||| | |||| |||||||| || || || |||||||| |||| | Sbjct 599835 CATTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATA 599776 Query 1594 CGATTGATGGTATCCCGCCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCC 1653 ||||||||| || | | |||||||||||| | || ||||| || || | |||| Sbjct 599775 CGATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCC 599716 Query 1654 AGTCCCTTTGGGCCCCAATCAACTCTTTCCAATGCTTTAACTTTAGATAATGCGGAGCGA 1713 | || |||| ||||||| || |||||| | ||||| | ||||| ||| ||||| Sbjct 599715 AATCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTG 599656 Query 1714 CATCATCAATGACGTTAT 1731 ||||||||||| | |||| Sbjct 599655 CATCATCAATGTCATTAT 599638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8239700754100