Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_012664.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq1129 86.0 1e-13 >seq1129 Length=1508174 Score = 86.0 bits (94), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 1779 ACCTTTAACCAGAACCGGTTTCCCATATTTCAGGTTACTTTGCCAGTCTTTCTGAGCTCC 1838 |||||||| ||||| ||||||||||| || ||||||||||| ||||| || | || Sbjct 679341 ACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTTG-CCCCC 679283 Query 1839 TAGAAACTCCTTCCAATG------CTTTAGATATTTAGGGGTGACGTCATCGATGACGTT 1892 | || || ||| |||| ||||| || | || || || ||||| ||||| || Sbjct 679282 AATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATT 679223 Query 1893 GTAACTTGCCTCGTTGTCGAATACGGCTCCGTTGAGGTCCA---GATGTCCGCTGAGATA 1949 || |||| || |||| |||||| | | ||||| || | |||| ||| | | || Sbjct 679222 ATATGTTGCATCATTGTGGAATACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTA 679163 Query 1950 GTTGTGACGGCCCAATGATCTAGCCCAAGCCGTTTTTCCT 1989 || |||||| | | ||| | ||| ||| ||||| ||| Sbjct 679162 ATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCT 679123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8703683903360