Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_012665.1 Length=2743 Score E Sequences producing significant alignments: (Bits) Value seq519 152 9e-34 seq1694 82.4 1e-12 >seq519 Length=3254320 Score = 152 bits (168), Expect = 9e-34 Identities = 257/362 (71%), Gaps = 10/362 (3%) Strand=Plus/Plus Query 2216 CCTCTAGCAGATCGTCCGTCGATCTGAAACTCTCCCCATTCAAGGATGTCTCCGTCCTTG 2275 || |||||||||| ||| || || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2276 TCGATGTAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATATTTGGATGGAAATGT 2335 |||||||| || || || | ||| ||||||||| |||| |||| ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2336 GCTGACCTGTGTGGG-GAGACCAGGTCGAAGAATCGCTTATTCTTGCACTGGTATTTCCC 2394 | |||| ||| || | | ||| || |||| | ||| |||| | |||| || Sbjct 1743262 ATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2395 CTCGAATTGGATGAGCACGTGTAGATGAGGTTCCCCATTTTCGTGAAACTCTCTGCAGA- 2453 ||| ||||| || || || | ||| |||||||| || ||| | ||| |||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2454 TCTTGATGTATTTTTTGGATGT-TGGGGT--TTGTAGGTTTTGGAGTTGGGAAAGTGCTT 2510 |||| ||| ||||| ||| | | |||| ||| ||| ||| ||| || ||| || | Sbjct 1743381 TCTT-ATGAATTTTA--GATTTGTAGGGTAGTTG-AGGCTTTTGAGATGATGAAGAGCAT 1743436 Query 2511 CCTCCTTTGTAAGGGAGCATTTTGGGTAAGTGAGGAAATAATTTTTGGCATTTATTTTAA 2570 | || ||||| ||||| ||| ||||| |||||||||||| ||||||| ||||||| ||| Sbjct 1743437 CATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATTCTAA 1743496 Query 2571 AC 2572 || Sbjct 1743497 AC 1743498 Score = 120 bits (132), Expect = 5e-24 Identities = 273/400 (68%), Gaps = 12/400 (3%) Strand=Plus/Plus Query 2216 CCTCTAGCAGATCGTCCGTCGATCTGAAACTCTCCCCATTCAAGGATGTCTCCGTCCTTG 2275 || ||| |||||| ||| || || ||||| || |||| || | |||||| ||||| Sbjct 1748957 CCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTT 1749016 Query 2276 TCGATGTAGGACTTGACG--TCTGAGCTTGATTTAGCTCCCTGAATATTTGGATGGAAAT 2333 || ||||| || || || || || |||||||||| |||| |||||||||||| | Sbjct 1749017 TCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATT 1749076 Query 2334 GTGCTGACCTGTGTGGGGAGACCAGGTCGAAGAATCGCTTATTCTTGCACTGGTATTTCC 2393 | | || | | ||| | |||||| || | | ||| |||| | |||||| Sbjct 1749077 GAATGGTTCTAT-TAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCC 1749135 Query 2394 CCTCGAATTGGATGAGCACGTGTAGATGAGGTTCCCCATTTTCGTGAAACTCTCTGCAGA 2453 | ||| | || || || || | ||| ||||||| | | ||| | |||||||| | Sbjct 1749136 CTGTGAACTAGA-GATTACATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGCACA 1749193 Query 2454 TCTTGATGTATTTTTTGGATGT-TGGGGT--TTGTAGGTTTTGGAGTTGGGAAAGTGCTT 2510 || ||| |||| ||| | | |||| ||| ||||||| ||| || ||| | | Sbjct 1749194 CTTTTATGAATTTAA--GATTTGTAGGGTAGTTG-AGGTTTTTGAGATGACGAAGAACAT 1749250 Query 2511 CCTCCTTTGTAAGGGAGCATTTTGGGTAAGTGAGGAAATAATTTTTGGCATTTATTTTAA 2570 | || ||||| || | ||| ||||| ||||||| |||||||||||| ||||||| ||| Sbjct 1749251 CATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCTAA 1749310 Query 2571 ACTGTTTTTTAGGAACCA-TGGTCAATGGACACCGATTGA 2609 || || || ||| ||| | |||| | ||||||||| Sbjct 1749311 ACATGTTATTGGGAGCCATTTTTCAAATGTTACCGATTGA 1749350 >seq1694 Length=789422 Score = 82.4 bits (90), Expect = 1e-12 Identities = 142/203 (70%), Gaps = 9/203 (4%) Strand=Plus/Minus Query 2379 TGCACTGGTATTTCCCCTCGAATTGGATGAGCACGTGTAGATGAGGTTCCCCATTTTCGT 2438 |||| | | ||||||| ||| |||| || ||||| | ||| |||||||| | || Sbjct 588229 TGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAAATGTGGTTCCCCGGTGCTGT 588170 Query 2439 GAAACTCTCTGCAGATCTTGATGTATTT----TTTGGATGTTGGGGTTTGTAGGTTTTGG 2494 | | |||||||| | | ||| |||| |||| | | | | ||| ||||||| | Sbjct 588169 GCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAGATAG---TTG-AGGTTTTTG 588114 Query 2495 AGTTGGGAAAGTGCTTCCTCCTTTGTAAGGGAGCATTTTGGGTAAGTGAGGAAATAATTT 2554 || || ||| | || || |||| || || ||| ||||| ||||||||||||| ||| Sbjct 588113 AGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGGGAAAGTGAGGAAATAGTTT 588054 Query 2555 TTGGCATTTATTTTAAA-CTGTT 2576 | | ||||||| |||| ||||| Sbjct 588053 TAGCTATTTATTCTAAACCTGTT 588031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8668485181692