Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_012786.1 Length=2672 Score E Sequences producing significant alignments: (Bits) Value seq1129 129 1e-26 seq1694 104 4e-19 seq519 96.9 6e-17 >seq1129 Length=1508174 Score = 129 bits (142), Expect = 1e-26 Identities = 269/394 (68%), Gaps = 10/394 (3%) Strand=Plus/Minus Query 1521 AATTGCGCATTTCGAAGGGTCCAATTTCTAAGTGATGCGTTTTCCTCTTTGTCGAGGAAG 1580 |||| |||||| | || ||| |||| | || | | ||||||||||| || ||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1581 TCTTTATAGCTGGACCCTTCCCCTGGATTACAGAGCACGATTGAAGGAACTCCACCTTTA 1640 |||||||||| | ||||| ||||||||||| | | |||||| || | ||||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1641 ATTTGAACTGGCTTTCCGTATTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAATGAGT 1700 ||| |||| || || || || || || || ||||| | | ||| | ||||||| | Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAAA 679276 Query 1701 TCCTTCCAGTGCTTCATTTTCAGATAATGTGGG-CTAATGTCATCAATGACGTTATATTC 1759 || ||| | |||||||| || | ||| ||||| | | ||||| ||||| |||||| Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAA-GTGGGAGTTACATCATCTATGACATTATATGT 679217 Query 1760 CACGTCAT--TTGAATAAACCCTGGAATTGAAATCCAAG---TGTCCACTAAGATAATTA 1814 | |||| | ||||| | | |||||||| ||| || || ||| |||||| Sbjct 679216 TGCATCATTGTGGAATACTGATTTG--TTGAAATCTAAGTGATGGCCGTTAATGTAATTA 679159 Query 1815 TGGACTCCTAATGAACGAGCCCACATTGTCTTCCCCGTTCGACTATCACCCTCGATGATA 1874 || | | ||| || ||| | | || || || ||||||| || || ||||| Sbjct 679158 TGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATT 679099 Query 1875 ATACTAATAGCTCGTTCAGGCCGCGCAGCGGCAT 1908 ||||| ||| || || |||| |||| ||| || Sbjct 679098 ATACTTTTAGGTCTATCTGGCCACGCATCGGTAT 679065 >seq1694 Length=789422 Score = 104 bits (114), Expect = 4e-19 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 1521 AATTGCGCATTTCGAAGGGTCCAATTTCTAAGTGATGCGTTTTCCTCTTTGTCGAGGAAG 1580 |||| |||||| | || |||||||| | || | | |||||||||| || |||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1581 TCTTTATAGCTGGACCCTTCCCCTGGATTACAGAGCACGATTGAAGGAACTCCACCTTTA 1640 ||||||||| | ||||| ||||||||||| | |||||||| | | ||| |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1641 ATTTGAACTGGCTTTCCGTATTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAATGAGT 1700 |||||||| | || || || || || | ||||| || |||| ||||||| | | Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1701 TCCTTCCAGTGCTTCAT-TTTCAGATAATGTGGGCTAATGTCATCAATGACGTTAT 1755 || ||| | |||||||| ||| || | || | ||| ||||||||| | |||| Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCT-GCATCATCAATGTCATTAT 599638 >seq519 Length=3254320 Score = 96.9 bits (106), Expect = 6e-17 Identities = 174/245 (71%), Gaps = 12/245 (5%) Strand=Plus/Plus Query 1521 AATTGCGCATTTCGAAGGGTCCAATTTCTAAGTGATGCGTTTTCCTCTTTGTCGAGGAAG 1580 |||| |||||| | || ||||||| | || | | | |||||||| || || ||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1581 TCTTTATAGC-TGGACCCTTCCCCTGGATTACAGAGCACGATTGAAGGAACTCCACCTTT 1639 ||||||||| || ||||| | | | ||| || | |||||||| || | |||||||| Sbjct 1742312 TCTTTATAGGATGCACCCT-CACTTAGATAGCACAATACGATTGATGGGATGCCACCTTT 1742370 Query 1640 AATTTGAACTGGCTTTCCG-TATTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAATGA 1698 ||||| ||| | |||||| | || || || ||||| || |||| ||||||| | Sbjct 1742371 AATTTAAAC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCA 1742429 Query 1699 GTTCCTTCCAGTG----CTTCATTTTCAGATAATGTGG--GCTAATGTCATCAATGACGT 1752 ||| ||||| || || ||| || | | |||||| ||| | ||||||||||| | Sbjct 1742430 ATTCTTTCCAATGCTACCTACATCTTTA-AGTATGTGGGAGCT-ACATCATCAATGACAT 1742487 Query 1753 TATAT 1757 ||||| Sbjct 1742488 TATAT 1742492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8441293432744