Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_013017.1 Length=2386 Score E Sequences producing significant alignments: (Bits) Value seq1129 95.1 2e-16 seq519 91.5 2e-15 >seq1129 Length=1508174 Score = 95.1 bits (104), Expect = 2e-16 Identities = 208/309 (67%), Gaps = 12/309 (4%) Strand=Plus/Minus Query 1338 ACCTGGATTGCAGAGGAAGATTGTTGGGATGCCGCCTTTAATTTGAACCGGTTTCCCGTA 1397 ||||||||| || | ||||||| ||||| | ||||||||| |||| |||||||| || Sbjct 679374 ACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATA 679315 Query 1398 TTTTGTGTTGCTTTGCCAGTCCTTTTGTGCACCCATGAACTCCTTAAAGTGTTTCAGAT- 1456 || || |||||||| || ||||| | || || || || || | || |||| | Sbjct 679314 CTTGCAATTACTTTGCCAATCTTTTTGCCC-CCAATCAAATCTTTCTAATGCTTCATCTT 679256 Query 1457 ------AATGCGGGTCAACATCATCTATGACGTTATACCATGCGTCATTACTGAACACCT 1510 | || | || | ||||||||||||| ||||| ||| ||||| ||| || Sbjct 679255 TAAGTAAGTGGGAGTTA-CATCATCTATGACATTATATGTTGCATCATTGTGGAATACTG 679197 Query 1511 TTGGGCTCAGATCAA---GATGGCCGCACAGATAATTATGAGGCCCAAGACTTCTGGCCC 1567 | | | | ||| | |||||||| | ||||||||| | | || | |||| Sbjct 679196 ATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCA 679137 Query 1568 ATACGGTCTTCCCTGTTCTGCTTTCTCCTTCAATCACTATACTAATCGGTCTACCTGGCC 1627 | || || ||| ||| ||| |||||||| | |||||| | |||||| |||||| Sbjct 679136 AAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCC 679077 Query 1628 GCGCAGCGG 1636 |||| ||| Sbjct 679076 ACGCATCGG 679068 >seq519 Length=3254320 Score = 91.5 bits (100), Expect = 2e-15 Identities = 240/356 (67%), Gaps = 8/356 (2%) Strand=Plus/Plus Query 1881 TCCTCTGGCAGATCTTCCGTCGATCTGGAATTCTCCCCATTCGAGTGTGTCTCCATCCTT 1940 ||| || ||||||||||| || || || || || | || || | |||||| ||||| Sbjct 1743141 TCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTT 1743200 Query 1941 GTCGATGTAGGACTTGACGTCGGAGCTGGACTTAGCTCCCTGAATGTTTGGATGGAAATG 2000 |||||||| || || || | ||| | || |||| |||| ||| ||||||| || Sbjct 1743201 TTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTG 1743260 Query 2001 TGCTGACCTATTTGGG-GAGACCAGGTCGAATAGTCTCTGATTTTGGCACTTGAACTTCC 2059 | || || ||| || | | ||| || | || ||||| ||| ||| || | Sbjct 1743261 AATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTAC 1743319 Query 2060 CTTCGAATTGGAGAAGCACATGCAGATGAGGTTGGCCATCCTCGTGAAGCTCTCTGCA-A 2118 || ||| |||| ||| ||||||| ||| |||| || | ||| || ||| |||| | Sbjct 1743320 CTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACA 1743379 Query 2119 ATCTTGATGTATTTTTTGTTTGATGCTGTACTT-ATTTGCTGGAGTTGCTCTAGGGCTTC 2177 |||| ||| ||||| |||| | ||| || | | ||| || | || || || Sbjct 1743380 CTCTT-ATGAATTTTAGATTTG-TAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATC 1743437 Query 2178 CTCTTTGCTTAGAGAACATTTTGGGAAAGTTAGGAAAAAATTCTTTGC-ATATATT 2232 ||||| | || |||||| |||||||||| |||||| ||| ||||| || |||| Sbjct 1743438 ATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATT-TTTGCTATTTATT 1743492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7526126669376