Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_013019.1 Length=2774 Score E Sequences producing significant alignments: (Bits) Value seq519 104 4e-19 >seq519 Length=3254320 Score = 104 bits (114), Expect = 4e-19 Identities = 237/346 (68%), Gaps = 8/346 (2%) Strand=Plus/Plus Query 2251 CCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCCAGTCGAGGGTGTCTCCCGTCCT 2310 || || |||||||||||||| || ||||| || | || || | | ||||||| |||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATC-ATCTCAATCTACGTAGTCTCCC-TCCT 1743199 Query 2311 TCTCCAGGTAGGACTTGACGTCCGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAAT 2370 | || | ||| || || || | ||| ||||||||| |||| || ||||||| | Sbjct 1743200 TTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATT 1743259 Query 2371 GTGCTGATCTGGTTGGG-GATACCAGGTCGAAGAATCTGTTATTCTGGCACTTGTATTTC 2429 | | |||| | ||| |||| | ||| || |||| | ||| ||| | |||| Sbjct 1743260 GAATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTA 1743318 Query 2430 CCCTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCAAGAAGCTCTCTGCAG 2489 || ||| ||||| || || || | ||| |||||||| || | || ||| |||| Sbjct 1743319 CCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCAC 1743378 Query 2490 A-TCTTGATGTATTTTTTATTTGTTGGG-GTTTGTAGGTTTTGAAATTGGGAAAGTGCTT 2547 | |||| ||| ||||| |||||| ||| ||| | |||||| | || ||| || | Sbjct 1743379 ACTCTT-ATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGA-TGATGAAGAGCAT 1743436 Query 2548 CCTCTTTAGTAAGAGAGCATTTCGGATAAGTGAGAAAATAATTTTT 2593 | ||||| || || || ||| | || ||||||| |||| |||||| Sbjct 1743437 CATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTT 1743482 Score = 84.2 bits (92), Expect = 4e-13 Identities = 226/338 (67%), Gaps = 7/338 (2%) Strand=Plus/Plus Query 2258 CAGATCTTCCATCGATCTGAAACTCTCCCCCAGTCGAGGGTGTCTCCCGTCCTTCTCCAG 2317 ||||||||||||| || ||||| || ||| | || | ||||||| ||||| || | Sbjct 1748964 CAGATCTTCCATCAATTTGAAAATCATCCCAA-TCTACATAGTCTCCC-TCCTTTTCAAT 1749021 Query 2318 GTAGGACTTGACG--TCCGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCT 2375 ||| || || || || || |||||||||| |||| || |||||||| || Sbjct 1749022 GTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATG 1749081 Query 2376 GATCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCTGGCACTTGTATTTCCCCTCG 2435 | ||| || ||| | | |||||| || | | ||| ||| | ||||||| | Sbjct 1749082 GTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTG 1749140 Query 2436 AACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCAAGAAGCTCTCTGCAGATCTTG 2495 |||| || || || || | ||| ||||||| | | | || |||||||| | || Sbjct 1749141 AACTAGA-GATTACATGCAAATGTGGTTCCCGTTGCTGT-GTAGTTCTCTGCACACTTTT 1749198 Query 2496 ATGTATTTTTTATTTGTTGGGGTTTGTAGGTTTTGAAATTGGGAAAGTGCTTCCTCTTTA 2555 ||| |||| |||||| ||| | ||||||| | || ||| | || ||||| Sbjct 1749199 ATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTT 1749258 Query 2556 GTAAGAGAGCATTTCGGATAAGTGAGAAAATAATTTTT 2593 || || | ||| | || ||||||||||||||||||| Sbjct 1749259 GTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTT 1749296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8764472333430