Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_013022.2 Length=2791 Score E Sequences producing significant alignments: (Bits) Value seq1694 107 3e-20 seq519 95.1 2e-16 >seq1694 Length=789422 Score = 107 bits (118), Expect = 3e-20 Identities = 190/271 (70%), Gaps = 7/271 (3%) Strand=Plus/Minus Query 2138 ATTATGATATTGAAATATAAATTTTTCAGGGAGTTTCTCCCTGATTATTTGTAACGCAGC 2197 ||||||||||| | | || || ||| ||| |||||| | ||||||||||| | || Sbjct 599377 ATTATGATATT-ATAGATGAAACTTTTTGGGTCTTTCTCTTTTATTATTTGTAATGTTGC 599319 Query 2198 TTCTTTAGAACCTGCGTTTAATGCCT-CTGCGGCAGCGTCGTTAGCAGTCTGCTGGCCTC 2256 ||| | || ||| ||||| || | | | | | | | || |||| | || Sbjct 599318 ATCTCTGGA-CCTAGAATTAATCACTTCAGTGTATACACCTGCAACTGTTTGCTTACATC 599260 Query 2257 CTCTAGCAGATCTGCCGTCGATCTGGAATTCACCCCAGTCGAGGTAGTCTCCGTCCTTCT 2316 ||||||||||| || ||||| || || |||||||| || | ||||||||| ||||| | Sbjct 599259 TCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTT 599200 Query 2317 CGATGTATGACTTGACATCCGAGGAGGACTTAGCTGCCTGGAAATTTGGATGGAATTGGG 2376 | |||||||| || |||| |||| || || | | ||| | | |||||||||||| | Sbjct 599199 CAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATT--G 599142 Query 2377 AGGAGTTATGT--GGATGTTGTAGGTCGAAA 2405 | |||| ||| || ||| ||| ||||||| Sbjct 599141 AATAGTTCTGTTAGGGTGTGGTATGTCGAAA 599111 >seq519 Length=3254320 Score = 95.1 bits (104), Expect = 2e-16 Identities = 222/327 (68%), Gaps = 11/327 (3%) Strand=Plus/Plus Query 2085 GAAGAATATAC-AGAAGGAGGAGGAGAAAATATCCTATCTAAATTGCTAACTAAATTATG 2143 ||| ||||||| |||| || ||| | ||||| | | | ||||| | |||||||| Sbjct 1748786 GAACAATATACTAGAATTAG-AGGGGCGAATATTCGACCCAAATTAGAATTGAAATTATG 1748844 Query 2144 ATATTGAAATATAAATTTTTCAGGGAGTTTCTCCCTGATTATTTGTAACGCAGCTTCTTT 2203 |||||| | || || | | ||| |||||| | ||||||||||| || || ||| | Sbjct 1748845 ATATTGTAGAATGAAACTCTTTGGGTCTTTCTCTTTTATTATTTGTAATGCTGCATCTCT 1748904 Query 2204 AGAACCTGCGT--TTAAT-GCCTCTGCGGCAGCGTCGTTAGCAGTCTGCTGGCCTCCTCT 2260 | ||| | ||||| || || ||| | || | | | | || | ||| || Sbjct 1748905 TGG---TGCATAATTAATCGCTTCAGCGTATACATCTGCAACTATTTTCTTACATCCCCT 1748961 Query 2261 AGCAGATCTGCCGTCGATCTGGAATTCACCCCAGTCGAGGTAGTCTCCGTCCTTCTCGAT 2320 | ||||||| || || || || || ||| |||| || | |||||||| ||||| || || Sbjct 1748962 AACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAAT 1749021 Query 2321 GTATGACTTGAC--ATCCGAGGAGGACTTAGCTGCCTGGAAATTTGGATGGAATTGGGAG 2378 |||||| || || ||| ||| || ||||| || | ||||||||||||||| | Sbjct 1749022 GTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATG 1749081 Query 2379 GAGTTATGTGGATGTTGTAGGTCGAAA 2405 | ||| || | ||||| ||||||| Sbjct 1749082 GTTCTATTAGGGT-TTGTATGTCGAAA 1749107 Score = 87.8 bits (96), Expect = 3e-14 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 2247 TGCTGGCCTCCTCTAGCAGATCTGCCGTCGATCTGGAATTCACCCCAGTCGAGGTAGTCT 2306 |||| | ||| ||||||||||| || || || || || ||| | || || | ||||||| Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCT 1743192 Query 2307 CCGTCCTTCTCGATGTATGACTTGACATCCGAGGAGGACTTAGCTGCCTGGAAATTTGGA 2366 || ||||| ||||||||||| || |||| |||| || |||| || | |||| || Sbjct 1743193 CCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGA 1743252 Query 2367 TGGAATTG 2374 |||||||| Sbjct 1743253 TGGAATTG 1743260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8818870299720