Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_013102.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq3069 89.7 9e-15 >seq3069 Length=10854949 Score = 89.7 bits (98), Expect = 9e-15 Identities = 130/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 1287 CAACGCTTTCCTCAGGTTGTAATTGAATTGGACTTGTATTGTGATGATGTCGTGGTTCAT 1346 ||| |||||||| |||||| | |||||||| | || || ||||||||||||| | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1347 CAGAAATGGTCTCTCGTCGTGGCTGATTATCTTGAAATATAGGGGATTTTTGACCGTCCA 1406 |||||||||| | ||| | ||| ||||||||||||||||||| || || Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCA 3754520 Query 1407 GATATATACGCCACTCTCTGC-TTGAGCTGCAGTGATAGCTTCCCCTGTGCGAGAATCCA 1465 ||||||||| || | | ||| | ||| | ||||| | || ||| |||||| ||| || Sbjct 3754521 AATATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACA 3754579 Query 1466 T 1466 | Sbjct 3754580 T 3754580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8684484600632