Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_013413.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq519 86.0 1e-13 seq2957 80.6 5e-12 seq1694 77.0 6e-11 >seq519 Length=3254320 Score = 86.0 bits (94), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 13/233 (6%) Strand=Plus/Plus Query 1293 TCCTGAGGTTGTGATTGAACTGGATCTGCATTTCTATGTAGTCCCAGTTGTTGTTGAACG 1352 ||||||| |||| ||||| || ||||| ||||||||| ||| ||||||||| || Sbjct 1741878 TCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAATT 1741937 Query 1353 ATCT-----GGTTTTGTGCTTCAGCACCTTGAAATAGAGGGGATTTGGGACCATCCAAGT 1407 ||| ||||| ||| | | |||||||||||||| |||||| | ||||| Sbjct 1741938 GTCTCCTCTGGTTTCGTGTT-----ATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGG 1741992 Query 1408 ATAAACGCCACTCTGCGCCTGAGTTGCAGTGATGTACTCCCCTGTGCGAAAATCCA-CAA 1466 ||| || ||| | | ||||| ||||| | ||||| ||| ||||||||| | Sbjct 1741993 ATATACACCATTGTTGCACTGAG-CCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGT 1742051 Query 1467 CCATGACAGTTAAGGCTGAGATAGTATGAGCATCCACAATCTAAATCAATGCG 1519 | | |||||||| | | || ||| ||| ||||| | || ||||||||| Sbjct 1742052 TCCT-ACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAATGCG 1742103 >seq2957 Length=4215098 Score = 80.6 bits (88), Expect = 5e-12 Identities = 195/286 (68%), Gaps = 12/286 (4%) Strand=Plus/Plus Query 1289 GCTCTCCTGAGGTTGTGATTGAACTGGATCTGCATTTCTATGTAGTCCCAGTTGTTGTTG 1348 ||| || ||||||||| |||||||| ||||| || |||||| || ||||||||| Sbjct 1238752 GCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTGTTG 1238811 Query 1349 AACGATCTGGTTTTGTGCTTCA--GCACCTTGAAATAGAGGGGATTTGGGACCATCCAAG 1406 || ||||| ||| ||| ||| | |||||||||| || ||||||| || | | | Sbjct 1238812 AATGATCTCCTTTGGTG--TCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAGG 1238869 Query 1407 TATAAACGCCACTCTGCGCCTGAGTTGCAGTGATGTACTCCCCTGTGCGAAAATCCA-CA 1465 |||| || || | | ||||| ||| ||| || | | ||||||||||||| Sbjct 1238870 TATATACTTCATTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCATTG 1238929 Query 1466 ACCATGACAGTTAAGGCTGAGATAGTAT-GAGCATCCACAATCTAAATCAATGCG---TC 1521 ||| | |||||| | | || ||| | ||| ||||| | || |||| | || || Sbjct 1238930 TTCAT-ATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCACTACGCTTTC 1238988 Query 1522 TTCGCCTTGTGATTTTC-TTTTTTGCAATTTTATGTTGAATTTTCT 1566 ||| ||||| |||| ||| || |||||| || ||| |||| Sbjct 1238989 TTCTAATTGTGCGTTTCACTTTGTGATGTTTTAT-TTTAATGTTCT 1239033 >seq1694 Length=789422 Score = 77.0 bits (84), Expect = 6e-11 Identities = 105/147 (71%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 2230 CTAGCAGATCTTCCATCGATCTGAAAACAACCCCAGTCGAGGTAATCGCCGTCCTTCTGA 2289 |||||||||||||||||||| |||||| |||||| || | ||| || || ||||| | | Sbjct 599257 CTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTCA 599198 Query 2290 ATGTACGACTTGATATCGGACGAAGATCTTGCTCCCTGAAAATTGGGGTGGAATGATCTG 2349 ||||| || || | || || | ||| ||| ||||| | | || |||||| | Sbjct 599197 ATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATTGAATA 599138 Query 2350 CTAGAATTAGGATGGGATATGTCGAAA 2376 | ||||| || | |||||||||| Sbjct 599137 GTTCTGTTAGGGTGTGGTATGTCGAAA 599111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8694084251996