Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_013414.1 Length=2733 Score E Sequences producing significant alignments: (Bits) Value seq1129 89.7 9e-15 >seq1129 Length=1508174 Score = 89.7 bits (98), Expect = 9e-15 Identities = 239/359 (67%), Gaps = 20/359 (6%) Strand=Plus/Minus Query 1653 CATTTTGTTCCTCGTCGAGGAACTCTTTATATGACGAT--TTCGGTCCTTGATTACAGAG 1710 |||||| || | || ||||| |||||||| ||| ||| ||| ||||||| | Sbjct 679417 CATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCA--CCTGGATTACACAA 679360 Query 1711 AAAGATGGTGGGGATACCACCTTTAATTTGTGTGGGCTTTCCGTATTTGACGTTACTTTG 1770 ||||| | |||| |||||||||| | ||| || || || ||| |||||||| Sbjct 679359 TAAGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTG 679300 Query 1771 CCAGTCACGTTGTGCGCCC-ATGAATTCTTTGAAATGTTTC------AAATAATGCGGAT 1823 ||| | | || ||| ||| || || ||||| |||| ||| || ||| ||| Sbjct 679299 CCAAT--CTTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAG 679242 Query 1824 CGACGTCATCAATGACGTTATACCATGCATCGT--TGGAATACACTTTCGGACTAAGGTC 1881 || ||||| ||||| ||||| |||||| | |||||||| || | | | || Sbjct 679241 TTACATCATCTATGACATTATATGTTGCATCATTGTGGAATACTGATTTG--TTGAAATC 679184 Query 1882 CAA---ATGGCCGCAAAGATAATTGTGCGGCCCTAATGCACGAGCCCATGTCGTCTTACC 1938 || ||||||| || ||||| || | | | || || ||| | || || || || Sbjct 679183 TAAGTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCC 679124 Query 1939 AGTACGACTATCTCCTTCAATGACTATACTAATAGGTCTCTCCGGCCGCGCAGCGGCAT 1997 | ||||| |||||||||| |||||| ||||||| || |||| |||| ||| || Sbjct 679123 TATTCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGGTAT 679065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8636486343812