Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_013465.1 Length=2807 Score E Sequences producing significant alignments: (Bits) Value seq1694 107 3e-20 seq1129 100 5e-18 seq519 100 5e-18 >seq1694 Length=789422 Score = 107 bits (118), Expect = 3e-20 Identities = 190/271 (70%), Gaps = 7/271 (3%) Strand=Plus/Minus Query 2154 ATTATGATATTGAAAAATATATTTTTCAGGGAGTTTCTCCCTTATTATTTGTAACGCAGC 2213 ||||||||||| | | | | |||| ||| |||||| ||||||||||||| | || Sbjct 599377 ATTATGATATTATAGATGAAACTTTTT-GGGTCTTTCTCTTTTATTATTTGTAATGTTGC 599319 Query 2214 TTCTTTAGAACCTGCGTTTAATGCCT-CTGCGGCAGCGTCGTTAGCAGTCTGCTGACCTC 2272 ||| | || ||| ||||| || | | | | | | | || |||| || || Sbjct 599318 ATCTCTGGA-CCTAGAATTAATCACTTCAGTGTATACACCTGCAACTGTTTGCTTACATC 599260 Query 2273 CTCTAGCAGATCTGCCGTCGATCTGGAATTCACCCCAGTCGAGGTAGTCTCCGTCCTTCT 2332 ||||||||||| || ||||| || || |||||||| || | ||||||||| ||||| | Sbjct 599259 TCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTT 599200 Query 2333 CGATGTATGACTTGACATCCGAGGAGGACTTAGCTGCCTGGAAATTTGGATGGAATTGGG 2392 | |||||||| || |||| |||| || || | | ||| | | |||||||||||| | Sbjct 599199 CAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATT--G 599142 Query 2393 AGGAGTTATGT--GGATGATGTAGGTCGAAA 2421 | |||| ||| || || ||| ||||||| Sbjct 599141 AATAGTTCTGTTAGGGTGTGGTATGTCGAAA 599111 >seq1129 Length=1508174 Score = 100 bits (110), Expect = 5e-18 Identities = 249/371 (67%), Gaps = 14/371 (4%) Strand=Plus/Minus Query 1670 AATTCTTTAGAGCTTCTTGTTCTGGTTTATCTAACCAGAGTTTAAATGAAGAGCCCTCTC 1729 ||||||| || || | | ||| |||||||| | |||| | | | || || | Sbjct 679432 AATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCAC 679373 Query 1730 CTGGATTGCAGAGGAAGATAG-TGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAT 1788 ||||||| || | ||||| | ||||| | |||||||||| |||| || ||||| || Sbjct 679372 CTGGATTACACAATAAGATTGATGGGAGGTA-ACCTTTAATTAGAACGGGTTTCCCATAC 679314 Query 1789 TTACAGTTTGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTT------T 1842 || || || |||||| || || || |||| || || || || | ||||| | Sbjct 679313 TTGCAATTACTTTGCCAATCTTTTTGC-CCCCAATCAAATCTTTCTAATGCTTCATCTTT 679255 Query 1843 AGGTAT-TGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATACTTT 1901 | ||| |||| ||| || ||||| ||||| ||||| ||| ||| | ||||| Sbjct 679254 AAGTAAGTGGGAGTT-ACATCATCTATGACATTATATGTTGCATCATTGTGGAATACTGA 679196 Query 1902 TGGGCTTAGATCTAA---ATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCA 1958 | | | | |||||| ||| || | ||||| ||| || | | || | |||| | Sbjct 679195 TTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAA 679136 Query 1959 CACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATTGATATAGGTCTATCCGGCCG 2018 ||||||||||||| |||||||||||||| | || | |||||||||| |||| Sbjct 679135 AGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCA 679076 Query 2019 CGCAGCGGAAT 2029 |||| ||| || Sbjct 679075 CGCATCGGTAT 679065 >seq519 Length=3254320 Score = 100 bits (110), Expect = 5e-18 Identities = 178/256 (70%), Gaps = 8/256 (3%) Strand=Plus/Plus Query 2140 AAATTTGAAACTAAATTATGATATTGAAAAATATATTTTTCAGGGAGTTTCTCCCTTATT 2199 ||||| ||| |||||||||||||| | ||| | | | ||| |||||| ||||| Sbjct 1748825 AAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCTTTGGGTCTTTCTCTTTTATT 1748884 Query 2200 ATTTGTAACGCAGCTTCTTTAGAACCTGCGT--TTAAT-GCCTCTGCGGCAGCGTCGTTA 2256 |||||||| || || ||| | | ||| | ||||| || || ||| | || | Sbjct 1748885 ATTTGTAATGCTGCATCTCTTGG---TGCATAATTAATCGCTTCAGCGTATACATCTGCA 1748941 Query 2257 GCAGTCTGCTGACCTCCTCTAGCAGATCTGCCGTCGATCTGGAATTCACCCCAGTCGAGG 2316 | | | || || ||| ||| ||||||| || || || || || ||| |||| || | Sbjct 1748942 ACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACA 1749001 Query 2317 TAGTCTCCGTCCTTCTCGATGTATGACTTGAC--ATCCGAGGAGGACTTAGCTGCCTGGA 2374 |||||||| ||||| || |||||||| || || ||| ||| || ||||| || | Sbjct 1749002 TAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAA 1749061 Query 2375 AATTTGGATGGAATTG 2390 ||||||||||||||| Sbjct 1749062 CATTTGGATGGAATTG 1749077 Score = 93.3 bits (102), Expect = 7e-16 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 2263 TGCTGACCTCCTCTAGCAGATCTGCCGTCGATCTGGAATTCACCCCAGTCGAGGTAGTCT 2322 |||| || ||| ||||||||||| || || || || || ||| | || || | ||||||| Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCT 1743192 Query 2323 CCGTCCTTCTCGATGTATGACTTGACATCCGAGGAGGACTTAGCTGCCTGGAAATTTGGA 2382 || ||||| ||||||||||| || |||| |||| || |||| || | |||| || Sbjct 1743193 CCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGA 1743252 Query 2383 TGGAATTGGGAGGAGTTATGT--GGATGATGTAGGTCGAAATGTCGTGGGTTTTTGAACT 2440 ||||||| || ||| ||| || |||| || ||| ||| || | | || || | Sbjct 1743253 TGGAATT--GAATGGTTCTGTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAAC 1743310 Query 2441 CTGCTTTCCCCTTGAACTGGATGAGAACATGGAGATG 2477 ||| || |||| ||||| || ||||| | ||| Sbjct 1743311 AGAATTTACCTGTGAAGTGGATAAGTACATGCAAATG 1743347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8870068385640