Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_013467.1 Length=2814 Score E Sequences producing significant alignments: (Bits) Value seq1129 109 1e-20 seq519 93.3 8e-16 >seq1129 Length=1508174 Score = 109 bits (120), Expect = 1e-20 Identities = 219/318 (69%), Gaps = 14/318 (4%) Strand=Plus/Minus Query 1724 CCCTCTCCTGGATTGCAGAGGAAGATAG-TGGGAATTCCACCTTTAATTTGAACTGGCTT 1782 || || |||||||| || | ||||| | ||||| | |||||||||| |||| || || Sbjct 679379 CCTTCACCTGGATTACACAATAAGATTGATGGGAGGTA-ACCTTTAATTAGAACGGGTTT 679321 Query 1783 CCCGTATTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTT 1842 ||| || || || || |||||| || || || |||| || || || || | ||||| Sbjct 679320 CCCATACTTGCAATTACTTTGCCAATCTTTTTGC-CCCCAATCAAATCTTTCTAATGCTT 679262 Query 1843 ------TAAGTAT-TGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTATTGCTGT 1895 |||||| |||| ||| || ||||| ||||| ||||| ||| |||| | Sbjct 679261 CATCTTTAAGTAAGTGGGAGTT-ACATCATCTATGACATTATATGTTGCATCATTGTGGA 679203 Query 1896 ATACTTTTGGGCTTAAATCTAA---ATGCCCACATAAATAGTTATGTGGGCCCAATGACC 1952 ||||| | | | |||||||| ||| || | || ||||| || | | ||| | Sbjct 679202 ATACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGC 679143 Query 1953 TGGCCCATACTGTTTTGCCGATTCTGCTTGGGCCTTCAATAACTATGGATATGGGTCTAT 2012 |||| | |||||||| |||| |||||||||||||| | ||| | | ||||||| Sbjct 679142 GGGCCAAAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTAT 679083 Query 2013 CCGGCCGCGCAGCGGAAT 2030 | |||| |||| ||| || Sbjct 679082 CTGGCCACGCATCGGTAT 679065 Score = 78.8 bits (86), Expect = 2e-11 Identities = 152/219 (69%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 2416 GTCGAAGAATCTCTGATTCGTGCATTGGTAGTTCCCTTCGAACTGCAACAGCACGTGGAG 2475 |||||| || || ||||| |||||| | | |||||| |||||| | || ||||| | Sbjct 678628 GTCGAAAAACCTTTGATTAGTGCATCAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 678569 Query 2476 ATGAGGTTCCCCATT---TTCATGC--AGCTCTCTGCATATCTTGATGAATTTTTTATTG 2530 ||| |||||||| || ||| || | | |||| || | ||||| ||| ||| Sbjct 678568 ATGTGGTTCCCCGGCCCGTTGTTGCGTAGTTTTATGCACATTCTTATGAAGTTTAGATTT 678509 Query 2531 GTTGGGGTGTTGAGATGAAGAAGCTGATCGAGAGCTTCTTCTTTGGTAAGAGAACAT-TG 2589 || ||| |||||| | || | |||| ||||| || ||||| | ||||||||| | Sbjct 678508 GTAGGGTAGTTGAGGTTTTGA-GATGATGAAGAGCATCATCTTTTGAGAGAGAACATCTT 678450 Query 2590 GGGATATGTAAGAAAATAGTTTTTGGCTTTTATATTAAA 2628 | || | | || |||||||||||| ||||| |||| Sbjct 678449 GAGAAAC-TGAGGAAATAGTTTTTGCTATTTATTCTAAA 678412 >seq519 Length=3254320 Score = 93.3 bits (102), Expect = 8e-16 Identities = 246/368 (67%), Gaps = 6/368 (2%) Strand=Plus/Plus Query 2264 TGCTGGCCTCCTCTAGCAGATCTGCCGTCGACCTGGAACTCACCCCATTCAATTGTGTCA 2323 |||| | ||| ||||||||||| || || | || || ||| | || || | ||| Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCT 1743192 Query 2324 CCGTCCTTATCGACGTAGGACTTGACATCGGAGCTGGATTTAGCTCTCTGGATATTAGGG 2383 || ||||| |||| ||| || || |||| ||| | ||||||| || | ||| | Sbjct 1743193 CCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGA 1743252 Query 2384 TGAAAGTGTGATGACCTTGATGGGGAAACA-AGGTCGAAGAATCTCTGATTCGTGCATTG 2442 || || || ||| || | ||| | | | ||| || |||| ||||| ||||| Sbjct 1743253 TGGAATTG-AATGGTTCTGTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACA 1743311 Query 2443 GTAGTTCCCTTCGAACTGCAACAGCACGTGGAGATGAGGTTCCCCATTTTCATGCAGCTC 2502 | | || ||| ||| || | || || || | ||| |||||||| || || || || Sbjct 1743312 GAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTC 1743371 Query 2503 TCTGCATA-TCTTGATGAATTTTTTATTGGTTGGGGTGTTGAGATGAAGAAGCTGATCGA 2561 | |||| | |||| ||||||||| ||| || ||| |||||| || |||| | Sbjct 1743372 TTTGCACACTCTT-ATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAA 1743430 Query 2562 GAGCTTCTTCTTTGGTAAGAGAACAT-TGGGGATATGTAAGAAAATAGTTTTTGGCTTTT 2620 |||| || ||||| || || |||||| | |||| | || || |||| |||||| ||| Sbjct 1743431 GAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTT 1743489 Query 2621 ATATTAAA 2628 || |||| Sbjct 1743490 ATTCTAAA 1743497 Score = 89.7 bits (98), Expect = 9e-15 Identities = 221/331 (67%), Gaps = 21/331 (6%) Strand=Plus/Plus Query 1711 TTTAAATGAGGAGCCCTCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAAT 1770 |||| | || | ||||| | | ||| ||| | | ||| | || || ||||||||||| Sbjct 1742314 TTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAAT 1742373 Query 1771 TTGAACTGGCTTCCCGTATTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTC 1830 || ||| | |||| | || || || |||||| || || || |||| || ||||| Sbjct 1742374 TTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTC 1742433 Query 1831 CTTAAAGTG----------CTTTAAGTAT-TGGGGGTTGACGTCATCAATGACGTTATAC 1879 || | || |||||||||| |||| | | || ||||||||||| ||||| Sbjct 1742434 TTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCT-ACATCATCAATGACATTATAT 1742492 Query 1880 CAAGCACTATTGCTGTATACTTTTGGGCTTAAATCTAAATGCCCACATAAATAGTTATGT 1939 ||| ||||| | ||||| | | | |||||||| || | | || ||| Sbjct 1742493 GTTGCATCATTGCAGAATACTGATTTGTTGAAATCTAAGTGGGC-CGCAATTAG------ 1742545 Query 1940 GGGCCCAATGACCTGGCCCATACTGTTTTGCCGATTCTGCTTGGGCCTTCAATAACTATG 1999 |||| | ||| ||||||| | ||||||| |||| || | ||||||||| | ||| Sbjct 1742546 CGGCCGAGTGA-GTGGCCCA-AGAATTTTGCCTATTCGACTCGAGCCTTCAATGATTATA 1742603 Query 2000 GATATGGGTCTATCCGGCCGCGCAGCGGAAT 2030 | | | |||||||| ||||| | || || || Sbjct 1742604 GTTTTAGGTCTATCGGGCCGGGTAGTGGCAT 1742634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8892467548230