Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_013639.1 Length=2808 Score E Sequences producing significant alignments: (Bits) Value seq519 109 1e-20 seq1694 86.0 1e-13 >seq519 Length=3254320 Score = 109 bits (120), Expect = 1e-20 Identities = 236/345 (68%), Gaps = 6/345 (2%) Strand=Plus/Plus Query 2273 TCCTCTAGCACTTCTGCCGTCGATTTGGAATTCTCCCCATTCAAGTGTGTCCCCGTCCTT 2332 ||| |||||| ||| || || ||||| || || | || || | ||| || ||||| Sbjct 1743141 TCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTT 1743200 Query 2333 GTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATG 2392 |||||||| || || || | ||| | ||||||| |||| ||| ||||||| || Sbjct 1743201 TTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTG 1743260 Query 2393 TGCTGACCTTGTTGGG-GATACCAGGTCGAAGAATCGTTGATTCTGGCAGTTGTATTTGC 2451 | || | ||| |||| | ||| || |||| |||||| ||| | |||| | Sbjct 1743261 AATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTAC 1743319 Query 2452 CTTCGAATTGCAGAAGCACATGGAGATGAGGCTCGCCATTTTCGTGGAGTTCTCTGCAGA 2511 || ||| || | ||| ||||| | ||| || || || || ||| |||||| |||| | Sbjct 1743320 CTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACA 1743379 Query 2512 TTTTGATGTATTTTTTGTTAGTTGGAGTA-TCGAGGTTTTGTAATTGGGAAAGTGCCTCT 2570 | | ||| ||||| || || || ||| | |||| ||| | || ||| || || Sbjct 1743380 CTCTTATGAATTTTAGATTTGTAGG-GTAGTTGAGGCTTTTGAGATGATGAAGAGCATCA 1743438 Query 2571 TCTTTTTCGAGAGAGCAT-TTGGGATAAGTGAGGAAATAATTTTT 2614 |||||| ||| || ||| |||||| |||||||||||| |||||| Sbjct 1743439 TCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTT 1743482 Score = 96.9 bits (106), Expect = 6e-17 Identities = 269/401 (67%), Gaps = 10/401 (2%) Strand=Plus/Plus Query 2273 TCCTCTAGCACTTCTGCCGTCGATTTGGAATTCTCCCCATTCAAGTGTGTCCCCGTCCTT 2332 ||| ||| || ||| || || ||||| || || |||| || | ||| || ||||| Sbjct 1748956 TCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTT 1749015 Query 2333 GTCGATGTAGGACTTGACG--TCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAA 2390 || ||||| || || || || || | |||||||| |||| ||||||||||| Sbjct 1749016 TTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAAT 1749075 Query 2391 TGTGCTGACCTTGTTGGGGATACCAGGTCGAAGAATCGTTGATTCTGGCAGTTGTATTTG 2450 || | || || ||| | | |||||| || | |||||| |||| | |||| Sbjct 1749076 TGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTC 1749134 Query 2451 CCTTCGAATTGCAGAAGCACATGGAGATGAGGCTCGCCATTTTCGTGGAGTTCTCTGCAG 2510 ||| ||| | ||| ||||| | ||| || || || || ||| ||||||||||| Sbjct 1749135 CCTGTGAACTAGAGATT-ACATGCAAATGTGGTTC-CCGTTGCTGTGTAGTTCTCTGCAC 1749192 Query 2511 ATTTTGATGTATTTTTTGTTAGTTGGAGTA-TCGAGGTTTTGTAATTGGGAAAGTGCCTC 2569 | ||| ||| |||| || || || ||| | |||||||| | || ||| | || Sbjct 1749193 ACTTTTATGAATTTAAGATTTGTAGG-GTAGTTGAGGTTTTTGAGATGACGAAGAACATC 1749251 Query 2570 TTCTTTTTCGAGAGAGCAT-TTGGGATAAGTGAGGAAATAATTTTTTGAGTTAATTCTGA 2628 |||||| ||| | ||| |||||| ||||||| ||||||||||| || ||||| | Sbjct 1749252 ATCTTTTGTGAGTAAACATCTTGGGA-AAGTGAGAAAATAATTTTTGCTATTTATTCTAA 1749310 Query 2629 ATTTTCTAGGAGGAGCCATATGGTCAACTAGCACCGATTGA 2669 | | || |||||||| | |||| | ||||||||| Sbjct 1749311 ACATGTTATTGGGAGCCAT-TTTTCAAATGTTACCGATTGA 1749350 >seq1694 Length=789422 Score = 86.0 bits (94), Expect = 1e-13 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 1348 TTGTGGTTGAACCTGATTTGTACTGTTATTATGTCGTGTTGGTAATTGAACGGT---CTC 1404 |||| ||||||| ||||| | ||| |||||||| | || ||||| ||| ||| Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1405 TCGTCGTGGTTGGTTATCTTGAAATACAGGGGATTTTGTATCTCCCAGATAAAAACGCCA 1464 | || || || |||||||||||||| || ||||| ||| ||||| | | |||||| Sbjct 596581 TAGT-GTCGT--GTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCA 596525 Query 1465 TTCCAAGCTTGATGCGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATTACTGCAGTT 1524 || || | |||||| ||||||| |||| ||||||| || ||||| || Sbjct 596524 TTGTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATT 596465 Query 1525 AATATGTATGAAGTATGTGCACCCGCA 1551 ||||||| | | |||||||| || || Sbjct 596464 AATATGTTGGTAATATGTGCAACCACA 596438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8873268266010