Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_013640.2 Length=2823 Score E Sequences producing significant alignments: (Bits) Value seq1129 87.8 3e-14 >seq1129 Length=1508174 Score = 87.8 bits (96), Expect = 3e-14 Identities = 215/319 (67%), Gaps = 14/319 (4%) Strand=Plus/Minus Query 1758 ACCCTCTCCTGGATTGCAGAGGAAGATAG-TGGGAATTCCGCCTTTAATTTGAACTGGCT 1816 ||| || |||||||| || | ||||| | ||||| | ||||||||| |||| || | Sbjct 679380 ACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAA-CCTTTAATTAGAACGGGTT 679322 Query 1817 TTCCGTATTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCT 1876 | || || || || || |||||| || || || |||| || || || || | |||| Sbjct 679321 TCCCATACTTGCAATTACTTTGCCAATCTTTTTGC-CCCCAATCAAATCTTTCTAATGCT 679263 Query 1877 T------TAGGTAT-TGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTG 1929 | || ||| |||| ||| || ||||| ||||| ||||| ||| ||| | Sbjct 679262 TCATCTTTAAGTAAGTGGGAGTT-ACATCATCTATGACATTATATGTTGCATCATTGTGG 679204 Query 1930 TAAACTTTTGGGCTTAAATCTAA---ATGCCCACACAAGTAATTGTGAGGGCCCAAAGAC 1986 | ||| | | | |||||||| ||| || | |||||| ||| || | | || Sbjct 679203 AATACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAG 679144 Query 1987 CTGGCCCATACTGTTTTTCCTATTCTGCTTGGGCCTTCAATAACAATGGATATGGGTCTA 2046 | |||| | ||||| ||||||| |||||||||||||| | || | | |||||| Sbjct 679143 CGGGCCAAAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTA 679084 Query 2047 TCCGGCCGCGCAGCGGAAT 2065 || |||| |||| ||| || Sbjct 679083 TCTGGCCACGCATCGGTAT 679065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8921266471560