Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014066.1 Length=2612 Score E Sequences producing significant alignments: (Bits) Value seq519 154 2e-34 seq1129 149 1e-32 seq1694 141 2e-30 >seq519 Length=3254320 Score = 154 bits (170), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 1490 TCCAGTTCCTGAGTGATGCGTTTTCCTCTTTGTCGAGGAAATCTTTATAGCTTGCACCCT 1549 |||| ||| |||| | | | |||||||| || || ||||||||||||||| |||||||| Sbjct 1742271 TCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCT 1742330 Query 1550 CACCTGGATTGCAAAGCACGATTGATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGT 1609 ||| | ||| ||| | |||||||||||||| || |||||||||| ||| | || | Sbjct 1742331 CACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAA 1742390 Query 1610 ATTTGCAATTTGACTGCCAATCCTTTTGGGCCCCGATCAATTCTTTCCAGTG----CTTT 1665 | |||||||| |||||||| ||||| |||| |||||||||||||| || || Sbjct 1742391 ACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTAC 1742450 Query 1666 AGCTTTAGATA-GTGCGGTGCGACGTCGTCAATGACGTTATA 1706 | ||||| || ||| || || || || |||||||| ||||| Sbjct 1742451 ATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTATA 1742491 Score = 107 bits (118), Expect = 3e-20 Identities = 244/362 (67%), Gaps = 4/362 (1%) Strand=Plus/Plus Query 2094 TTGCTGGCCTCCTCTAGCAGATCTGCCGTCGATCTGAAATTCTCCCCATTCGATTGTA-T 2152 ||||| | ||| ||||||||||| || || || ||||| || | || || | ||| | Sbjct 1743132 TTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTA-CGTAGT 1743190 Query 2153 CTCCGTCCTTGTCGATATAGGATTTGACGTCGGAGCTGGATTTAGTTCCCTGAATGTTCG 2212 |||| ||||| ||||| || ||||| || | ||| | ||||||| |||| || Sbjct 1743191 CTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTT 1743250 Query 2213 GATGGAAATGTGCTGACCGACTTGGG-GACACCAGGTCGAAGAATCTGTTATTCGTGCAT 2271 ||||||| || | | | ||| || | | ||| || |||| | ||| ||||| Sbjct 1743251 GATGGAATTGAATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAA 1743309 Query 2272 CTGTATTTCCCCTCGAACTGGATAAGGACGTGCAGATGAGGTTGCCCATCTTCGTGAAGT 2331 | | |||| || ||| |||||||| || |||| ||| |||| ||| | ||| ||| Sbjct 1743310 CAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGT 1743369 Query 2332 TCTCTGCAGATTTTGATGAATTTCTTGTTGACCGGAGTGTTTAGGTTTTGTAATTGGGAA 2391 ||| |||| | | | |||||||| || || ||| ||| ||| | || | Sbjct 1743370 TCTTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGA 1743429 Query 2392 AGTGCCTCTTCTTTTGTAAGAGAACACTGTGGATATGTGAGGAAATAGTTTTTCTGATTT 2451 || || || |||||||| || ||||| ||| | |||||||||| ||||| |||| Sbjct 1743430 AGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTT 1743489 Query 2452 AT 2453 || Sbjct 1743490 AT 1743491 Score = 82.4 bits (90), Expect = 1e-12 Identities = 233/353 (66%), Gaps = 5/353 (1%) Strand=Plus/Plus Query 2103 TCCTCTAGCAGATCTGCCGTCGATCTGAAATTCTCCCCATTCGATTGTATCTCCGTCCTT 2162 ||| ||| ||||||| || || || ||||| || |||| || | ||||| ||||| Sbjct 1748956 TCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTT 1749015 Query 2163 GTCGATATAGGATTTGACG--TCGGAGCTGGATTTAGTTCCCTGAATGTTCGGATGGAAA 2220 || || || ||||| || || || | ||||||| |||| || |||||||| Sbjct 1749016 TTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAAT 1749075 Query 2221 TGTGCTGACCGACTTGGGGACACCAGGTCGAAGAATCTGTTATTCGTGCATCTGTATTTC 2280 || | | | || ||| | |||||| || | | ||| ||||| | | ||||| Sbjct 1749076 TGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTC 1749134 Query 2281 CCCTCGAACTGGATAAGGACGTGCAGATGAGGTTGCCCATCTTCGTGAAGTTCTCTGCAG 2340 || ||||| || | || |||| ||| |||| || | | ||| ||||||||||| Sbjct 1749135 CCTGTGAACTAGAGATT-ACATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGCAC 1749192 Query 2341 ATTTTGATGAATTTCTTGTTGACCGGAGTGTTTAGGTTTTGTAATTGGGAAAGTGCCTCT 2400 | ||| |||||||| || || ||| ||||||| | || ||| | || Sbjct 1749193 ACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCA 1749252 Query 2401 TCTTTTGTAAGAGAACACTGTGGATATGTGAGGAAATAGTTTTTCTGATTTAT 2453 |||||||| || |||| ||| | ||||| ||||| ||||| |||||| Sbjct 1749253 TCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTAT 1749305 >seq1129 Length=1508174 Score = 149 bits (164), Expect = 1e-32 Identities = 174/231 (75%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 1477 GCATTCTTGATGGTCCAGTTCCTGAGTGATGCGTTTTCCTCTTTGTCGAGGAAATCTTTA 1536 ||||| | || ||| | ||| |||| | | ||||||||||| || |||||||||||| Sbjct 679448 GCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTA 679389 Query 1537 TAGCTTGCACCCTCACCTGGATTGCAAAGCACGATTGATGGGATACCTCCTTTAATTTGA 1596 |||| ||||| ||||||||||| || | | ||||||||||| ||||||||| || Sbjct 679388 TAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGA 679329 Query 1597 ACTGGCTTGCCGTATTTGCAATTTGACTGCCAATCCTTTTGGGCCCCGATCAATTCTTTC 1656 || || || || || |||||||| ||||||| ||||| | |||| ||||| |||||| Sbjct 679328 ACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAAATCTTTC 679270 Query 1657 CAGTGCTTTAGCTTT-AGATAGTGCGGTGCGACGTCGTCAATGACGTTATA 1706 | ||||| | |||| || |||| || | || || || ||||| ||||| Sbjct 679269 TAATGCTTCATCTTTAAGTAAGTG-GGAGTTACATCATCTATGACATTATA 679220 Score = 100 bits (110), Expect = 5e-18 Identities = 265/403 (66%), Gaps = 29/403 (7%) Strand=Plus/Minus Query 2061 ATTCAACGCCTTGGCATATGTATCGTTAGCTGATTGCTGGCCTCCTCTAGCAGATCTGCC 2120 ||| | ||| ||||||||| ||| | ||| ||||| | ||| |||||| |||| || Sbjct 678801 ATTAATCGCTTTGGCATATACATCTGCAACTGTTTGCTTACATCCCCTAGCATATCTTCC 678742 Query 2121 GTCGATCTGAAATTCTCCCCATTCGA--TTGTATC---TCCGTCCTTGTCGATATAGGAT 2175 || || ||||| || ||||| || | | || || ||| ||||| || || || ||| Sbjct 678741 TTCAATTTGAAAATCACCCCAATCTACATAGTCTCCGATCCCTCCTTTTCAATGTATGAT 678682 Query 2176 TTGACGTCGGAGCTGGATTTAGTTCCCTGAATGTTCGGATGGAAATGTGCTGACCGACTT 2235 || | || |||||| |||| || |||||| ||| || | || Sbjct 678681 TTAATATC--------ATTTAGCAGATTGAACATTTGGATGGTTCTGTT---ACTGTGTT 678633 Query 2236 GGGGACACCAGGTCGAAGAATCTGTTATTCGTGCATCTGTATTTCCCCTCGAACTGGATA 2295 | | |||||| || || | ||| ||||||| | ||||||| |||||||| | Sbjct 678632 GT-------ATGTCGAAAAACCTTTGATTAGTGCATCAGAATTTCCCTATGAACTGGAGA 678580 Query 2296 AGGACGTGCAGATGAGGTT-----GCCCATCTTCGTGAAGTTCTCTGCAGATTTTGATGA 2350 || ||||||| ||| |||| |||| | | | | |||| | |||| ||| | |||| Sbjct 678579 AGTACGTGCAAATGTGGTTCCCCGGCCCGTTGTTGCGTAGTTTTATGCACATTCTTATGA 678520 Query 2351 ATTTCTTGTTGACCGGAGTGTTTAGGTTTTGTAATTGGGAAAGTGCCTCTTCTTTTGTAA 2410 | || || || ||| |||||||| || ||| | || || ||||||| | Sbjct 678519 AGTTTAGATTTGTAGGGTAGTTGAGGTTTTGAGATGATGAA-GAGCATCATCTTTTGAGA 678461 Query 2411 GAGAACACTGTGGATATGTGAGGAAATAGTTTTTCTGATTTAT 2453 ||||||| || | |||||||||||||||| |||||| Sbjct 678460 GAGAACATCTTGAGAAACTGAGGAAATAGTTTTTGCTATTTAT 678418 >seq1694 Length=789422 Score = 141 bits (156), Expect = 2e-30 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 1477 GCATTCTTGATGGTCCAGTTCCTGAGTGATGCGTTTTCCTCTTTGTCGAGGAAATCTTTA 1536 ||||| | || ||||| ||| |||| | | |||||||||| || ||||||||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1537 TAGCTTGCACCCTCACCTGGATTGCAAAGCACGATTGATGGGATACCTCCTTTAATTTGA 1596 ||| ||||| ||||||||||| || | |||||||||| ||| | | |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1597 ACTGGCTTGCCGTATTTGCAATTTGACTGCCAATCCTTTTGGGCCCCGATCAATTCTTTC 1656 || | || || || ||||||| |||||||| ||||| |||| || ||||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1657 CAGTGCTTTAGCTTT-AGATAGTGCGGTGCGACGTCGTCAATGACGTTAT 1705 | ||||| | |||| || |||| || || | || |||||| | |||| Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTAT 599638 Score = 104 bits (114), Expect = 4e-19 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1510 TTTTCCTCTTTGTCGAGGAAATCTTTATAGCTTGCACCCTCACCTGGATTGCAAAGCACG 1569 ||||||||||| || | ||||||| | ||| |||||| |||| | ||||||| | ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1570 ATTGATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTATTTGCAATT 1619 ||||||||||| || |||||||||| ||| || || || || |||||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 Score = 86.0 bits (94), Expect = 1e-13 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 2247 GTCGAAGAATCTGTTATTCGTGCATCTGTATTTCCCCTCGAACTGGATAAGGACGTGCAG 2306 |||||| || | | ||| |||||| | ||||||| |||||||| ||| ||||||| Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2307 ATGAGGTTGCCCATCTTCGTGAAGTTCTCTGCAGATTTTGATGAATTTCTTGTTGACCGG 2366 ||| |||| ||| ||| ||||||||||| | | |||||||| || | Sbjct 588189 ATGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAG 588130 Query 2367 AGTGTTTAGGTTTTGTAATTGGGAAAGTGCCTCTTCTTTTGTAAGAGAACACTGTGGATA 2426 | ||| ||||||| | || ||| | || ||||||| |||||||| ||| | Sbjct 588129 ATAGTTGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGGGAA 588070 Query 2427 TGTGAGGAAATAGTTTT 2443 |||||||||||||||| Sbjct 588069 AGTGAGGAAATAGTTTT 588053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8249300405464