Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014130.1 Length=2611 Score E Sequences producing significant alignments: (Bits) Value seq519 136 7e-29 seq1129 131 3e-27 seq1694 129 1e-26 >seq519 Length=3254320 Score = 136 bits (150), Expect = 7e-29 Identities = 173/235 (74%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 1478 GCATTCTTCAGGGTCCAATTCTTTAGACCTGTGTTTTCCTCTTTGTCTAGGAAGTCTTTA 1537 ||||| | || |||||||||| ||| || |||||||| || |||||||| |||||| Sbjct 1742258 GCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTA 1742317 Query 1538 TAGCTGGCACCCTCACCCGGATTGCAAAGCACGATTGATGGAATCCCGCCTTTAATTTGA 1597 ||| |||||||||| ||| ||| | ||||||||||| || || |||||||||| | Sbjct 1742318 TAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAA 1742377 Query 1598 ACTGGTTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTC 1657 || |||| | | |||||||| ||||| || || || |||| | | ||||||| Sbjct 1742378 ACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTC 1742437 Query 1658 CAGTG----CTTCAACTTTAGATA-GTGCGGTGCGACGTCATCAATGACGTTATA 1707 || || || || ||||| || ||| || || || ||||||||||| ||||| Sbjct 1742438 CAATGCTACCTACATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTATA 1742491 >seq1129 Length=1508174 Score = 131 bits (144), Expect = 3e-27 Identities = 170/231 (74%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 1478 GCATTCTTCAGGGTCCAATTCTTTAGACCTGTGTTTTCCTCTTTGTCTAGGAAGTCTTTA 1537 ||||| | || ||| ||||||| || | ||||||||||| |||||||| |||||| Sbjct 679448 GCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTA 679389 Query 1538 TAGCTGGCACCCTCACCCGGATTGCAAAGCACGATTGATGGAATCCCGCCTTTAATTTGA 1597 |||| ||||| ||||| ||||| || | | ||||||||| | ||||||||| || Sbjct 679388 TAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGA 679329 Query 1598 ACTGGTTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTC 1657 || ||||| || || |||||||| ||||| | ||| | | |||| | | |||||| Sbjct 679328 ACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAAATCTTTC 679270 Query 1658 CAGTGCTTCAACTTT-AGATAGTGCGGTGCGACGTCATCAATGACGTTATA 1707 | ||||||| |||| || |||| || | || ||||| ||||| ||||| Sbjct 679269 TAATGCTTCATCTTTAAGTAAGTG-GGAGTTACATCATCTATGACATTATA 679220 >seq1694 Length=789422 Score = 129 bits (142), Expect = 1e-26 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 1478 GCATTCTTCAGGGTCCAATTCTTTAGACCTGTGTTTTCCTCTTTGTCTAGGAAGTCTTTA 1537 ||||| | || ||||||||||| || | |||||||||| || |||| |||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1538 TAGCTGGCACCCTCACCCGGATTGCAAAGCACGATTGATGGAATCCCGCCTTTAATTTGA 1597 ||| ||||| ||||| ||||| || | |||||||||| || | | |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1598 ACTGGTTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTC 1657 || |||| || || ||||||| ||||| || || || |||| | || ||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1658 CAGTGCTTCAACTTT-AGATAGTGCGGTGCGACGTCATCAATGACGTTAT 1706 | ||||||| |||| || |||| || || | ||||||||| | |||| Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTAT 599638 Score = 93.3 bits (102), Expect = 7e-16 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 1492 CCAATTCTTTAGACCTGTGTTTTCCTCTTTGTCTAGGAAGTCTTTATAGCTGGCACCCTC 1551 ||||||||| || | ||||||||||| || | ||| ||| | ||| ||||| || Sbjct 596256 CCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTC 596197 Query 1552 ACCCGGATTGCAAAGCACGATTGATGGAATCCCGCCTTTAATTTGAACTGGTTTGCCGTA 1611 || ||||||| | ||||||||||| || || |||||||||| ||| ||||| || || Sbjct 596196 ACTTAGATTGCACAATACGATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATA 596137 Query 1612 TTTGCAATT 1620 |||||||| Sbjct 596136 CTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8246100521676