Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014138.1 Length=2653 Score E Sequences producing significant alignments: (Bits) Value seq519 138 2e-29 seq1129 136 7e-29 seq1694 132 8e-28 >seq519 Length=3254320 Score = 138 bits (152), Expect = 2e-29 Identities = 177/241 (73%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 1507 AATTTAGCATTGTGTATTGTCCAGGCTTTTAGTGATGAGTTTTCCTGCTTGTCCAGGAAA 1566 |||| |||||| |||| |||| || || | | ||||||| || || |||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1567 TCTTTATAGCTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTA 1626 ||||||||| || ||||| | ||| ||| | |||||||||||||| || |||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1627 ATTTGAACAGGCTTGCCGTACTTGCAATTGGACTGCCAATCTTTTTGAGCACCAATCAAT 1686 |||| ||| | || | |||||||||| |||||||||||||| | ||||||||| Sbjct 1742372 ATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAAT 1742431 Query 1687 TCCTTCCAGTG----CTTTAGCTTTAGGTAT-TGCGGGCTGACATCATCGATGACGTTAT 1741 || ||||| || || | ||||| |||| || | ||| |||||||| ||||| |||| Sbjct 1742432 TCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCT-ACATCATCAATGACATTAT 1742490 Query 1742 A 1742 | Sbjct 1742491 A 1742491 >seq1129 Length=1508174 Score = 136 bits (150), Expect = 7e-29 Identities = 149/197 (76%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 1546 TTTTCCTGCTTGTCCAGGAAATCTTTATAGCTGGCCCCCTCTCCAGGATTGCAGAGCACG 1605 ||||||| || || |||||||||||||||| || || || || ||||| || | | | Sbjct 679415 TTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAG 679356 Query 1606 ATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTACTTGCAATTGGACTGCCAA 1665 |||||||||| ||||||||| |||| || || || ||||||||||| |||||| Sbjct 679355 ATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAA 679296 Query 1666 TCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTTAGGTATTGCGGGCTGACA 1725 |||||||| | |||||||| || ||| | ||||| | ||||| ||| || | ||| Sbjct 679295 TCTTTTTG-CCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACA 679237 Query 1726 TCATCGATGACGTTATA 1742 ||||| ||||| ||||| Sbjct 679236 TCATCTATGACATTATA 679220 >seq1694 Length=789422 Score = 132 bits (146), Expect = 8e-28 Identities = 149/197 (76%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 1546 TTTTCCTGCTTGTCCAGGAAATCTTTATAGCTGGCCCCCTCTCCAGGATTGCAGAGCACG 1605 ||||||| | ||| |||||||||||||| || || || || ||||| || | ||| Sbjct 599833 TTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATACG 599774 Query 1606 ATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTACTTGCAATTGGACTGCCAA 1665 ||||||| ||| | | ||||||||||||| | || || |||||||||| |||||| Sbjct 599773 ATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAA 599714 Query 1666 TCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTTAGGT-ATTGCGGGCTGAC 1724 |||||||| | ||||| ||||| ||| | ||||| | ||||| || | || | |||| | Sbjct 599713 TCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTG-C 599655 Query 1725 ATCATCGATGACGTTAT 1741 |||||| ||| | |||| Sbjct 599654 ATCATCAATGTCATTAT 599638 Score = 86.0 bits (94), Expect = 1e-13 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1546 TTTTCCTGCTTGTCCAGGAAATCTTTATAGCTGGCCCCCTCTCCAGGATTGCAGAGCACG 1605 ||||||| || |||| ||||||| | ||| || || || | ||||||| | ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1606 ATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTACTTGCAATT 1655 ||||||||||| || |||||||||| ||| || || || ||||||||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8380495640772