Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014324.1 Length=2981 Score E Sequences producing significant alignments: (Bits) Value seq1129 98.7 2e-17 >seq1129 Length=1508174 Score = 98.7 bits (108), Expect = 2e-17 Identities = 234/349 (67%), Gaps = 6/349 (2%) Strand=Plus/Minus Query 1838 CTTAAGGGCTTCATTCTCTGGTTTGTCGAGGAAGTTTTGATATGAGGCTCCGTCTCCTGG 1897 ||| ||||| |||| || ||| || ||||| | || ||| | || || || ||||| Sbjct 679428 CTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGG 679369 Query 1898 GTTGCATAAAATGATCGAAGGGATTCCCCCTTTTATAATACGTGGCTTCCCGTATTTGAG 1957 || || || | ||| || |||| ||||| || | | || ||||| || ||| Sbjct 679368 ATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCA 679309 Query 1958 GTTTGTCTGCCACTCCTTTTGCGCACCAATTAAATGCTTCCAGTGCTTCATCTTTAGATA 2017 || | ||||| || |||||| | ||||| |||| ||| | ||||||||||||| || Sbjct 679308 ATTACTTTGCCAATCTTTTTGCCC-CCAATCAAATCTTTCTAATGCTTCATCTTTAAGTA 679250 Query 2018 A-TGGGGGTCCACGTCATCAATCACGTTGTAAGAAACGTCGTCGTTGTATACTTTAGTGG 2076 | |||| || || ||||| || || || || | | || | || | ||||| || Sbjct 679249 AGTGGGAGTT-ACATCATCTATGACATTATATGTTGCATCATTGTGGAATACTGATTTGT 679191 Query 2077 AGAAGTCGA---GATGACCGGTTATGTAATTATGAGATCCAAGGGATCTTGCCCACAGGG 2133 ||| || | |||| ||| | |||||||||||| | || || | ||| | | Sbjct 679190 TGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAG 679131 Query 2134 TTTTACCTGTTCTTGAAGGACCTTCGATGATTATTGATTTAGGTCTGTC 2182 |||| ||| ||| || ||||| |||||||| ||||||||| || Sbjct 679130 TTTTGCCTATTCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATC 679082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9426847570020