Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014446.1 Length=2608 Score E Sequences producing significant alignments: (Bits) Value seq1129 138 2e-29 seq519 136 7e-29 seq1694 122 1e-24 >seq1129 Length=1508174 Score = 138 bits (152), Expect = 2e-29 Identities = 256/372 (69%), Gaps = 8/372 (2%) Strand=Plus/Minus Query 1477 GTCCAATTCTTTAGACCTGTGTTTTCCTCTTTGGCTAGGAAATCTTTATAGCTAGCACCC 1536 ||| ||||||| || | ||||||||||| |||||||||||||||||| ||||| Sbjct 679436 GTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCT 679377 Query 1537 TCACCAGGATTGCAAAGCACGATTGCTGGGATCCCGCCTTTAATTTGAACTGGCTTGCCG 1596 ||||| ||||| || | | ||||| ||||| ||||||||| |||| || || || Sbjct 679376 TCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCA 679317 Query 1597 TACTTGCAATTTGATTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAAC 1656 ||||||||||| |||||| | ||| | | |||| | | |||||| | ||||| | | Sbjct 679316 TACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATC 679258 Query 1657 TTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACGTCATTTGAAAATACT 1716 |||| || || | || ||||| ||||| ||||| | ||||| |||||| Sbjct 679257 TTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTTGCATCATTGTGGAATACT 679198 Query 1717 CGAGGGTTGAAGTCCA---GATGTCCACTAAGATAATTATGTGGGCCTAACGAACGAGCC 1773 |||||| || | |||| || ||| |||||||| || | | || || ||| Sbjct 679197 GATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCC 679138 Query 1774 CACATCGTCTTCCCTGTCCTCGAGT--CACCTTCTACTATGATACTCATAGGTCTCTCCG 1831 | | || || ||| | |||| | ||||| | || ||||| ||||||| || | Sbjct 679137 AAAGTAGTTTTGCCTAT--TCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTG 679080 Query 1832 GCCGCGCAGCGG 1843 ||| |||| ||| Sbjct 679079 GCCACGCATCGG 679068 >seq519 Length=3254320 Score = 136 bits (150), Expect = 7e-29 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 1478 TCCAATTCTTTAGACCTGTGTTTTCCTCTTTGGCTAGGAAATCTTTATAGCTAGCACCCT 1537 |||||||||| ||| || |||||||| || ||||||||||||||||| ||||||| Sbjct 1742271 TCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCT 1742330 Query 1538 CACCAGGATTGCAAAGCACGATTGCTGGGATCCCGCCTTTAATTTGAACTGGCTTGCCGT 1597 ||| ||| ||| | ||||||| |||||| || |||||||||| ||| | || | Sbjct 1742331 CACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAA 1742390 Query 1598 ACTTGCAATTTGATTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTG----CTTT 1653 |||||||||| |||||| || || || |||| | | ||||||||| || || Sbjct 1742391 ACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTAC 1742450 Query 1654 AACTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATA 1694 | ||||| ||| || || || ||||||||||| ||||| Sbjct 1742451 ATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 >seq1694 Length=789422 Score = 122 bits (134), Expect = 1e-24 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1477 GTCCAATTCTTTAGACCTGTGTTTTCCTCTTTGGCTAGGAAATCTTTATAGCTAGCACCC 1536 ||||||||||| || | |||||||||| | |||||||||||||| ||||| Sbjct 599854 GTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCT 599795 Query 1537 TCACCAGGATTGCAAAGCACGATTGCTGGGATCCCGCCTTTAATTTGAACTGGCTTGCCG 1596 ||||| ||||| || | ||||||| || ||| | | |||||||||||| | || || Sbjct 599794 TCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCA 599735 Query 1597 TACTTGCAATTTGATTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAAC 1656 |||||||||| |||||| || || || |||| | || ||||||| | ||||| | | Sbjct 599734 TACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATC 599675 Query 1657 TTTAGATATTGCGGTGCGACGTCATCAATGACGTTAT 1693 |||| || || || | ||||||||| | |||| Sbjct 599674 TTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTAT 599638 Score = 96.9 bits (106), Expect = 6e-17 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 1479 CCAATTCTTTAGACCTGTGTTTTCCTCTTTGGCTAGGAAATCTTTATAGCTAGCACCCTC 1538 ||||||||| || | ||||||||||| | | ||||||| | ||| ||||| || Sbjct 596256 CCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTC 596197 Query 1539 ACCAGGATTGCAAAGCACGATTGCTGGGATCCCGCCTTTAATTTGAACTGGCTTGCCGTA 1598 || ||||||| | ||||||| |||||| || |||||||||| ||| || || || || Sbjct 596196 ACTTAGATTGCACAATACGATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATA 596137 Query 1599 CTTGCAATTTGATTGCCA 1616 ||||||||| |||||| Sbjct 596136 CTTGCAATTACTTTGCCA 596119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8236500870312