Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014473.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq1694 82.4 1e-12 seq519 77.0 6e-11 >seq1694 Length=789422 Score = 82.4 bits (90), Expect = 1e-12 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 2224 CTGTCTGTTGACCTCCTCTAGCAGATCTTCCATCGATCTGAAACTGACCCCAGTCGATGT 2283 |||| || | || || |||||||||||||||||||| ||||| | |||||| || | || Sbjct 599274 CTGTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGT 599215 Query 2284 AATCACTGTCCTTCTCGATGTAGGACTTGACATCAGAGCTGGACTTTGCTCCCTGGAAGT 2343 | || | ||||| || ||||| || || |||| |||| || |||| ||| | Sbjct 599214 AGTCTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACAC 599155 Query 2344 TTGGGTGGAATTG 2356 |||| |||||||| Sbjct 599154 TTGGATGGAATTG 599142 >seq519 Length=3254320 Score = 77.0 bits (84), Expect = 6e-11 Identities = 143/210 (68%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 2234 ACCTCCTCTAGCAGATCTTCCATCGATCTGAAACTGACCCCAGTCGATGTAATCACTGTC 2293 || ||| ||||||||||||||||| || ||||| | | | || || | ||| || | || Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTC 1743197 Query 2294 CTTCTCGATGTAGGACTTGACATCAGAGCTGGACTTTGCTCCCTGGAAGTTTGGGTGGAA 2353 ||| |||||||| || || |||| |||| | || || | || | ||| | ||||| Sbjct 1743198 CTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAA 1743257 Query 2354 TTGGGAGGAGTTATTAGGGTGAGTGACATCGAAATGTCTGGGGTTTCTGAACTGGGATTT 2413 ||| || | ||||||||| | || ||| || | || || | | |||| Sbjct 1743258 TTGAATGGTTCTGTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACAGAATTT 1743317 Query 2414 ACCTTTGAATTGGATGAGTGCGTGGATATG 2443 |||| |||| ||||| ||| | || | ||| Sbjct 1743318 ACCTGTGAAGTGGATAAGTACATGCAAATG 1743347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8671685065480