Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014510.2 Length=2591 Score E Sequences producing significant alignments: (Bits) Value seq1129 152 8e-34 seq519 129 1e-26 seq1694 120 5e-24 >seq1129 Length=1508174 Score = 152 bits (168), Expect = 8e-34 Identities = 275/394 (70%), Gaps = 16/394 (4%) Strand=Plus/Minus Query 1453 AATTTTGCATTGTGGAGTGTCCACGCTCTT-AGAGCTGCATTTTCCTCTTTCTCAAGGAA 1511 |||| |||||| ||||| ||| | |||| || || ||||||||||||| || ||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAAT-TCTTGAGGGCAACATTTTCCTCTTTATCTAGGAA 679396 Query 1512 GTCTTTATAGCTCTGTCCCTCTCCTGGATTGCAGAGCACGATAGAGGGTATGCCACCTTT 1571 |||||||||| | || || |||||||| || | | ||| || || | | |||||| Sbjct 679395 ATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTT 679336 Query 1572 AATTTGAATTGGCTTTCCGTATTTACAGTTTGATTGCCAATCTTTCTGGGCCCCTATCAG 1631 |||| ||| || || || || || || || |||||||||||| | | |||| |||| Sbjct 679335 AATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTT-TTGCCCCCAATCAA 679277 Query 1632 CTCTTTCCAATGTTTCATCTTTAAATATTGCGGACTGACGTCATCAATGACGTTATAGTC 1691 |||||| |||| ||||||||||| || ||| | || ||||| ||||| ||||| Sbjct 679276 ATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGT 679217 Query 1692 CGCTCCAT--TTGAATAAACTTTGGAATTAAAATCCA---GGTGTCCACTCAGATAATTA 1746 || ||| | ||||| || | || ||||| | | || || | | |||||| Sbjct 679216 TGCATCATTGTGGAATACTGATTTG--TTGAAATCTAAGTGATGGCCGTTAATGTAATTA 679159 Query 1747 TGTGGGCCTAGTGCACGAGCCCACATAGTCTTACCTGT---CCTTGAACATCCCTCTATT 1803 || || | |||| || ||| | |||| || ||| | |||| || || || Sbjct 679158 TGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTCGACTTG---GGCCTTCAATG 679102 Query 1804 ATTATACTGATAGGTCTTTCTGGCCGCGCAGCGG 1837 |||||||| ||||||| ||||||| |||| ||| Sbjct 679101 ATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 129 bits (142), Expect = 1e-26 Identities = 177/242 (73%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 1453 AATTTTGCATTGTGGAGTGTCCACGCTCTT-AGAGCTGCATTTTCCTCTTTCTCAAGGAA 1511 |||| ||||| || || |||| |||| |||||| |||||||||| || || ||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAAT-TCTTGAGAGCTACATTTTCCTCATTATCTAGGAA 1742310 Query 1512 GTCTTTATAGCTCTGTCCCTCTCCTGGATTGCAGAGCACGATAGAGGGTATGCCACCTTT 1571 ||||||||| ||||| | | ||| ||| | ||||| || || ||||||||||| Sbjct 1742311 ATCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTT 1742370 Query 1572 AATTTGAATTGGCTTTCCG-TATTTACAGTTTGATTGCCAATCTTTCTGGGCCCCTATCA 1630 ||||| || | |||||| | || || || |||||||||||| || |||| |||| Sbjct 1742371 AATTT-AAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCA 1742429 Query 1631 GCTCTTTCCAATG----TTTCATCTTTAAATATTGCGGACTGACGTCATCAATGACGTTA 1686 ||||||||||| | ||||||||| ||| ||| || ||||||||||| ||| Sbjct 1742430 ATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTA 1742489 Query 1687 TA 1688 || Sbjct 1742490 TA 1742491 Score = 82.4 bits (90), Expect = 1e-12 Identities = 198/286 (69%), Gaps = 14/286 (5%) Strand=Plus/Plus Query 1107 ATGTCGTCCAGA-CTTGGAAGTTCAAGAAGGCTTTGTGTAGTTGAAGCGACTTCCTCAGG 1165 |||||||||||| |||| || | | | || || || | ||| || | ||||| || Sbjct 1741827 ATGTCGTCCAGATCTTGAAAAAT-ATCTATGCCTTATGAAATTGTAGGGTTTTCCTGAGA 1741885 Query 1166 TTGTGGTTGAACCGTATTTGGATGTGGTATACTCTCGTCGTTGTGGACGGTATGTCTTCC 1225 |||| |||||| |||| ||||| | ||| | |||| ||||| | ||||| | Sbjct 1741886 TTGTAGTTGAAATGTATCTGGATTTC-TATGATGTCGTGGTTGTTGTTAAATTGTCTCCT 1741944 Query 1226 ACG--TTC-TGT-ATCTTGAAATAAAGGGGATTTGGTACCTCCCA--GATAAAAACGGAA 1279 | ||| ||| ||||||||||| |||| |||||||| ||||| |||| | || | Sbjct 1741945 CTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATATACAC--CA 1742002 Query 1280 TTCTCTGC-CTGATGCACAGTGATGTTCTCCCCGGTGCGTGAATCCATTATTAACACAGT 1338 || | ||| |||| || ||||| | ||||||||| | ||||||| || ||||| Sbjct 1742003 TTGT-TGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCCTACAGT 1742060 Query 1339 TAATATGCAGGAAGAATGAGCAGCCACAGTCTAGGTCTATGCGTTT 1384 |||| || || | || ||| ||||||| || || ||||| || Sbjct 1742061 TAATGTGTTGGTAATATATGCAACCACAGTATATATCAATGCGCTT 1742106 >seq1694 Length=789422 Score = 120 bits (132), Expect = 5e-24 Identities = 172/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 1453 AATTTTGCATTGTGGAGTGTCCACGCTCTT-AGAGCTGCATTTTCCTCTTTCTCAAGGAA 1511 |||| |||||| ||||| ||||| |||| || || |||||||||||| || |||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAAT-TCTTGAGGGCCACATTTTCCTCTTCATCCGGGAA 599814 Query 1512 GTCTTTATAGCTCTGTCCCTCTCCTGGATTGCAGAGCACGATAGAGGGTATGCCACCTTT 1571 ||||||||| | || || |||||||| || | ||||| || | ||| ||| ||| Sbjct 599813 ATCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTT 599754 Query 1572 AATTTGAATTGGCTTTCCGTATTTACAGTTTGATTGCCAATCTTTCTGGGCCCCTATCAG 1631 |||||||| | || || || || || | |||||||||||| || |||| || | Sbjct 599753 AATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAA 599694 Query 1632 CTCTTTCCAATGTTTCATCTTTAAAT-ATTGCGGACTGACGTCATCAATGACGTTAT 1687 |||||| | || ||||||||||| | | || | ||| | ||||||||| | |||| Sbjct 599693 TTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTG-CATCATCAATGTCATTAT 599638 Score = 77.0 bits (84), Expect = 5e-11 Identities = 116/161 (72%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 1453 AATTT-TGCATTGTGGAGTGTCCACGCTCTT-AGAGCTGCATTTTCCTCTTTCTCAAGGA 1510 ||||| ||||| ||||||| ||| |||| || || ||||||||||||| || | || Sbjct 596277 AATTTATGCATATTGGAGTGCCCAAT-TCTTCAGGGCCACATTTTCCTCTTTATCCATGA 596219 Query 1511 AGTCTTTATAGCTCTGTCCCTCTCCTGGATTGCAGAGCACGATAGAGGGTATGCCACCTT 1570 | ||| | ||| || || | | ||||||| | ||||| || || |||||||||| Sbjct 596218 AATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTT 596159 Query 1571 TAATTTGAATTGGCTTTCCGTATTTACAGTTTGATTGCCAA 1611 |||||| || || || || || || || || ||||||| Sbjct 596158 TAATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCCAA 596118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8182102845916