Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014542.1 Length=2763 Score E Sequences producing significant alignments: (Bits) Value seq519 91.5 3e-15 >seq519 Length=3254320 Score = 91.5 bits (100), Expect = 3e-15 Identities = 162/233 (70%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 1313 TTCCTGATATTGTGATTGAATCTTATCTGAATGGAAATGATGTCGTGGCTCATTAGAAAT 1372 ||||||| ||||| ||||| |||||| || |||||||||||| | | |||| Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1373 GGCCTCTCGTCGTGGTTGGTG--ATCTTGAAATACAGGGGATTTTCTATCTCCCATATAA 1430 | |||| || | || ||| ||||||||||| |||| |||| || ||||| | Sbjct 1741937 TG--TCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGAT 1741994 Query 1431 AAACGCCATTCTGGGCTTGATGAGCAGTGATGAGTTCCCCGGTGCGTGAATCCATGATTG 1490 | || ||||| | | ||| | ||||| ||||||||||| | ||||||| || Sbjct 1741995 ATACACCATTGTTGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTC 1742053 Query 1491 ATGCAGTTGATGTGGAGGTAATATGAGCATCCGCAGTCGAGGTCTATGCGCTT 1543 | ||||| ||||| |||||||| ||| || |||| | || |||||||| Sbjct 1742054 CTACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAATGCGCTT 1742106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8732482857452