Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014596.1 Length=2707 Score E Sequences producing significant alignments: (Bits) Value seq519 111 3e-21 >seq519 Length=3254320 Score = 111 bits (122), Expect = 3e-21 Identities = 243/355 (68%), Gaps = 7/355 (2%) Strand=Plus/Plus Query 2181 CCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTA 2240 || || |||||||||||||| || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2241 TCCATATAGGACTTGACATCGGAACTCGATTTAGCTCCCTGAATGTTCGGATGGAAATGT 2300 || || || || || |||| || | ||||||| |||| || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2301 GCTGACCTGGTTGGGGAGA-CCAGGTCGAAGAATCTGTTATTCTGGCATTTGTATTTCCC 2359 | || ||| ||| || | ||| || |||| | ||| ||| | |||| || Sbjct 1743262 ATGGTTCT-GTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2360 TTCGAACTGGATAAGCACGTGGAGATGAGGAGACCCATTCTTCGTGAAGCTCTCTGCAGA 2419 | ||| |||||||| || || | ||| || ||| || | ||| || ||| |||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCT-GTGTAGTTCTTTGCACA 1743379 Query 2420 -TCTTGATGAATTTTTTATTTGTAGGTGTGGAT-AGGTTTCGTAATTGGGAAAGTGCTTC 2477 |||| ||||||||| ||||||||| || | | ||| || | || ||| || || Sbjct 1743380 CTCTT-ATGAATTTTAGATTTGTAGG-GTAGTTGAGGCTTTTGAGATGATGAAGAGCATC 1743437 Query 2478 CTCTTTGGTGAGTGAGCACTGTGGATAAGTGAGGAAATAATTTCTGGCATTTATT 2532 ||||| ||||| || || ||| |||||||||||| |||| || ||||||| Sbjct 1743438 ATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATT 1743492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8553289365324