Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014631.1 Length=3065 Score E Sequences producing significant alignments: (Bits) Value seq1129 143 5e-31 seq1694 140 6e-30 seq519 120 6e-24 >seq1129 Length=1508174 Score = 143 bits (158), Expect = 5e-31 Identities = 234/335 (70%), Gaps = 4/335 (1%) Strand=Plus/Minus Query 1982 CATTTTCATCTTTATCCAAAAAATCTTTAAAGCTGGATCCCTCACCAGGATTACATAAAA 2041 ||||||| |||||||| | ||||||||| ||| | || ||||| |||||||| || | Sbjct 679417 CATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATA 679358 Query 2042 TAATTGAGGGTATTCCACCTTTAATCTGAACAGGCTTTCCATATTTGCAGTTGCTTTGCC 2101 ||||| || | ||||||||| |||| || || ||||| ||||| || ||||||| Sbjct 679357 AGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCC 679298 Query 2102 AATCATGTTGGGCCCCAATAAGCTCTTTCCAATGCTTTAATTTTAAATAAGATGGTGCTA 2161 |||| | || | ||||||| | |||||| ||||||| | ||||| |||| || | || Sbjct 679297 AATC-TTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTA 679239 Query 2162 TGTCATCAATGACATTATATTCCACTTCATTACTGTACACACGTGGATTGAAATCAA--- 2218 ||||| |||||||||||| | ||||| | | || | |||||||| | Sbjct 679238 CATCATCTATGACATTATATGTTGCATCATTGTGGAATACTGATTTGTTGAAATCTAAGT 679179 Query 2219 GATGCCCAGACAAGTAATTATGCTTACCTAACGATCTGGCCCAGCATGTTTTACCTGTTC 2278 |||| || | ||||||||| | | || | |||| | ||||| ||| ||| Sbjct 679178 GATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTC 679119 Query 2279 TACTATCACCTTCAATTATTAAAGATTTTGGTCTA 2313 ||| |||||||| |||| | ||| |||||| Sbjct 679118 GACTTGGGCCTTCAATGATTATACTTTTAGGTCTA 679084 >seq1694 Length=789422 Score = 140 bits (154), Expect = 6e-30 Identities = 231/332 (70%), Gaps = 1/332 (0%) Strand=Plus/Minus Query 1982 CATTTTCATCTTTATCCAAAAAATCTTTAAAGCTGGATCCCTCACCAGGATTACATAAAA 2041 ||||||| |||| |||| ||||||||| || | || ||||| |||||||| || | Sbjct 599835 CATTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATA 599776 Query 2042 TAATTGAGGGTATTCCACCTTTAATCTGAACAGGCTTTCCATATTTGCAGTTGCTTTGCC 2101 ||||| | || ||| |||||| |||||| | || ||||| ||||| | ||||||| Sbjct 599775 CGATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCC 599716 Query 2102 AATCATGTTGGGCCCCAATAAGCTCTTTCCAATGCTTTAATTTTAAATAAGATGGTGCTA 2161 |||| | ||| ||||||||| |||||| | ||||| | ||||| |||| || ||| Sbjct 599715 AATCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTG 599656 Query 2162 TGTCATCAATGACATTATATTCCACTTCATTACTGTACACACGTGGATTGAAATCAAGAT 2221 ||||||||| |||||| | | ||||| | | || | ||||||||| | Sbjct 599655 CATCATCAATGTCATTATCTGGTGCATCATTCTAGAATACTGATTTGTTGAAATCATAGT 599596 Query 2222 GCCCAGACAAGTAATTATGCTTACCTAACGATCTGGCCCAGCATGTTTTACCTGTTCTAC 2281 | || | ||||||||| ||||| | || ||| || |||| ||| ||| || Sbjct 599595 GACCGCTTATGTAATTATGATTACC-GAGGAGTGGGCACAAACAATTTTGCCTATTCGAC 599537 Query 2282 TATCACCTTCAATTATTAAAGATTTTGGTCTA 2313 | |||||||| |||| || ||| ||| || Sbjct 599536 TTGGGCCTTCAATGATTATAGTTTTAGGTTTA 599505 Score = 80.6 bits (88), Expect = 5e-12 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 1982 CATTTTCATCTTTATCCAAAAAATCTTTAAAGCTGGATCCCTCACCAGGATTACATAAAA 2041 ||||||| |||||||||| |||||| | || | || |||| |||| || || | Sbjct 596239 CATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATA 596180 Query 2042 TAATTGAGGGTATTCCACCTTTAATCTGAACAGGCTTTCCATATTTGCAGTTGCTTTGCC 2101 ||||| || || ||||||||||| | ||| || || ||||| ||||| || ||||||| Sbjct 596179 CGATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCC 596120 Query 2102 AA 2103 || Sbjct 596119 AA 596118 >seq519 Length=3254320 Score = 120 bits (132), Expect = 6e-24 Identities = 238/344 (69%), Gaps = 15/344 (4%) Strand=Plus/Plus Query 1982 CATTTTCATCTTTATCCAAAAAATCTTTAAAGCTGGATCCCTCACCAGGATTACATAAAA 2041 ||||||| || ||||| | ||||||||| || | ||||||| ||| || || | Sbjct 1742289 CATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCTCACTTAGATAGCACAATA 1742348 Query 2042 TAATTGAGGGTATTCCACCTTTAATCTGAACAGGCTTTCCATATTTGCAGTTGCTTTGCC 2101 ||||| || || ||||||||||| | ||| | || | | | ||||| || ||||||| Sbjct 1742349 CGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCC 1742408 Query 2102 AATCATGTTGGGCCCCAATAAGCTCTTTCCAATGCT---TTAAT-TTTAAATAAGATGGT 2157 |||| | ||| ||||||| | ||||||||||||| | || ||||| || | || Sbjct 1742409 AATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGA 1742468 Query 2158 GCTATGTCATCAATGACATTATATTCCACTTCATTACTGTACACACGTGGATTGAAATC- 2216 |||| |||||||||||||||||| | ||||| | | | || | |||||||| Sbjct 1742469 GCTACATCATCAATGACATTATATGTTGCATCATTGCAGAATACTGATTTGTTGAAATCT 1742528 Query 2217 AAGATGCCCAGACAAGTAATTATGCTTACCTAACGATCTGGCCCAGCATGTTTTACCTGT 2276 ||| | || | ||||| || || | || ||||||| | |||| ||| | Sbjct 1742529 AAGTGGGCC------GCAATTA-GC-GGCCGAGTGA-GTGGCCCAAGA-ATTTTGCCTAT 1742578 Query 2277 TCTACTATCACCTTCAATTATTAAAGATTTTGGTCTAATGGGCC 2320 || ||| |||||||| |||| || ||| |||||| ||||| Sbjct 1742579 TCGACTCGAGCCTTCAATGATTATAGTTTTAGGTCTATCGGGCC 1742622 Score = 91.5 bits (100), Expect = 3e-15 Identities = 162/234 (69%), Gaps = 7/234 (3%) Strand=Plus/Plus Query 2083 TATTTGCAGTTGCTTTGCCAATCATGTTGGGCCCCAATAAGCTCTTTCCAATGCTTTAAT 2142 ||| || | || ||||| |||| | ||| || | ||| | |||||| ||||||| | | Sbjct 1748460 TATCTGGAATTACTTTGTCAATATTTTTGTGCACTAATTAATTCTTTCAAATGCTTCATT 1748519 Query 2143 TTTAAATAAGATGGTGCTATGTCATCAATGACATTATATTCCACTTCATTACTGTACACA 2202 ||||| |||| || || | |||||||||||||||||| | ||||| | | || Sbjct 1748520 TTTAAGTAAGTGGGGGCAACATCATCAATGACATTATATGTTGCATCATTGTGGAATACT 1748579 Query 2203 CGTGGATTGAAATCAA---GATGCCCAGACAAGTAATTATGCTTACCTAACGATCTGGCC 2259 | |||||||| | ||| || | | ||||||||| || | || |||| Sbjct 1748580 GATTTTTTGAAATCTAATTGATCCCTA---ATGTAATTATGACGGCCGAGTGAGGGGGCC 1748636 Query 2260 CAGCATGTTTTACCTGTTCTACTATCACCTTCAATTATTAAAGATTTTGGTCTA 2313 ||||| ||||| ||| ||| ||| ||||||||| |||| | ||| |||||| Sbjct 1748637 CAGCA-GTTTTTCCTATTCAACTTGGACCTTCAATGATTATACTTTTAGGTCTA 1748689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9695637521100