Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014645.1 Length=2792 Score E Sequences producing significant alignments: (Bits) Value seq519 143 5e-31 seq1694 89.7 9e-15 seq1129 78.8 2e-11 >seq519 Length=3254320 Score = 143 bits (158), Expect = 5e-31 Identities = 256/369 (69%), Gaps = 10/369 (3%) Strand=Plus/Plus Query 2247 CTGTTTGTTGGCCTCCTCTTGCAGATCTTGCATCGATTTGAAATTCTCCCCATTCGAGGG 2306 || |||| | | ||| || ||||||||| |||| |||||||| || | || || | | Sbjct 1743128 CTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGT 1743187 Query 2307 TGTCGCCGTCCTTGTCGATGTAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGTATGT 2366 ||| || ||||| |||||||| || || |||| ||| | ||||||| || | | Sbjct 1743188 AGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACAT 1743247 Query 2367 TCGGATGGAAATGTGCTGACCTGTTAGGG-GATATGAGGTCGAAGAATCGCTGATTCTGG 2425 | ||||||| || | ||||||||| ||||| | ||| || |||| ||||| | Sbjct 1743248 TTTGATGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTG 1743306 Query 2426 CACTTGTACTTCCCTTCGAATTGCATAAGCACATGGAGATGAGGTTCGCCATTCTCGTGG 2485 || | | || ||| ||| || ||||| ||||| | ||| ||||| || || ||| Sbjct 1743307 CAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGT 1743366 Query 2486 AGTTCTCTGCAAATTTTAATATATTTTTTATTGGTTGGGGTATTTAA----TTTGAGTAT 2541 |||||| |||| | | | || ||||| ||| || ||| || || | |||||| Sbjct 1743367 AGTTCTTTGCACACTCTTATGAATTTTAGATTTGTAGGG-TAGTTGAGGCTTTTGAGA-- 1743423 Query 2542 TTGTTCGAGTGCCTCTTCTTTGGATAGAGAGCATTTTGGGAAAGTGAGGAAATAATTTTT 2601 || | || || || ||||| | || || ||| |||||||||||||||||| |||||| Sbjct 1743424 -TGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTT 1743482 Query 2602 TGCATTTAT 2610 |||||| Sbjct 1743483 GCTATTTAT 1743491 Score = 95.1 bits (104), Expect = 2e-16 Identities = 264/398 (66%), Gaps = 13/398 (3%) Strand=Plus/Plus Query 2219 TTAATTGCTCCGGCGTAAGCATCATTGGCTGTTTGTTGGCCTCCTCTTGCAGATCTTGCA 2278 ||||| ||| | ||||| |||| || ||| | | ||| || |||||||| || Sbjct 1748915 TTAATCGCTTCAGCGTATACATCTGCAACTATTTTCTTACATCCCCTAACAGATCTTCCA 1748974 Query 2279 TCGATTTGAAATTCTCCCCATTCGAGGGTGTCGCCGTCCTTGTCGATGTAGGACTTGAC- 2337 || |||||||| || |||| || | ||| || ||||| || ||||| || || || Sbjct 1748975 TCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACC 1749034 Query 2338 -ATCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGTTAGGGG 2396 ||| || | |||||||| || | || |||||||| || | || |||||| Sbjct 1749035 CATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGTTCTATTAGGGT 1749094 Query 2397 ATATGAGGTCGAAGAATCGCTGATTCTGGCACTTGTACTTCCCTTCGAATTGCATAAGCA 2456 | | | |||||| || | ||||| ||| | | |||||| ||| | | | | Sbjct 1749095 TTGT-ATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAACTAGAGATT-A 1749152 Query 2457 CATGGAGATGAGGTTCGCCATTCTCGTGGAGTTCTCTGCAAATTTTAATATATTTTTTAT 2516 |||| | ||| ||||| | | || ||| ||||||||||| | ||| || |||| || Sbjct 1749153 CATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGCACACTTTTATGAATTTAAGAT 1749211 Query 2517 TGGTTGGGGTATTTAA----TTTGAGTATTTGTTCGAGTGCCTCTTCTTTGGATAGAGAG 2572 | || ||| || || | |||||| || || | || ||||| | || | Sbjct 1749212 TTGTAGGG-TAGTTGAGGTTTTTGAGA---TGACGAAGAACATCATCTTTTGTGAGTAAA 1749267 Query 2573 CATTTTGGGAAAGTGAGGAAATAATTTTTTGCATTTAT 2610 ||| ||||||||||||| ||||||||||| |||||| Sbjct 1749268 CATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTAT 1749305 >seq1694 Length=789422 Score = 89.7 bits (98), Expect = 9e-15 Identities = 238/361 (66%), Gaps = 16/361 (4%) Strand=Plus/Minus Query 2247 CTGTTTGTTGGCCTCCTCTTGCAGATCTTGCATCGATTTGAAATTCTCCCCATTCGAGGG 2306 ||||||| | | || || ||||||||| ||||||||||||| || ||||| || | | Sbjct 599274 CTGTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGT 599215 Query 2307 TGTCGCCGTCCTTGTCGATGTAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGTATGT 2366 ||| || ||||| || ||||| || || |||| ||| ||||| | ||| | Sbjct 599214 AGTCTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACAC 599155 Query 2367 TCGGATGGAAATGTGCTGACCTGTTAGGGGATATGAGGTCGAAGAATCGCTGATTCTGGC 2426 | |||||||| || | ||||||||| | | |||||| || | |||| | Sbjct 599154 TTGGATGGAATTGAATAGTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTC 599096 Query 2427 ACTTGTACTTCCCTTCGAATTGCATAAGCACATGGAGATGAGGTTCGCCATTCTCGTGGA 2486 | | | || ||| ||||| | ||| || || | ||| ||||| || || || | Sbjct 599095 AACAGAATTTTCCTGTGAATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTA 599036 Query 2487 GTTCTCTGCAAATTTTAATATATTT----TTTAT----TGGTTGGGGTATTTAATTTGAG 2538 ||||| ||| | | | || |||| ||||| | |||||||| | |||| Sbjct 599035 ATTCTCAGCACACTCTTATGAATTTGAGATTTATAGCGTAGTTGGGGTTT----TTTG-- 598982 Query 2539 TATTTGTTCGAGTGCCTCTTCTTTGGATAGAGAGCATTTTGGGAAAGTGAGGAAATAATT 2598 | || | || | || ||||| | ||||||||| |||| |||||| ||||||| || Sbjct 598981 -AAATGATGAAGAACATCATCTTTTAAGAGAGAGCATCTTGGTAAAGTGTGGAAATAGTT 598923 Query 2599 T 2599 | Sbjct 598922 T 598922 Score = 86.0 bits (94), Expect = 1e-13 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 1335 TTGTGGTTGAACCTGATTTGTACTGTTATTATGTCGTGTTGGTAGTTGAACGGT---CTC 1391 |||| ||||||| ||||| | ||| |||||||| | || |||||| ||| ||| Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1392 TCGTCGTGGTTGGTTATCTTGAAATACAGGGGATTTTGTATCTCCCAGATAAAAACGCCA 1451 | || || || |||||||||||||| || ||||| ||| ||||| | | |||||| Sbjct 596581 TAGT-GTCGT--GTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCA 596525 Query 1452 TTCCAAGCTTGATGCGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATTACTGCAGTT 1511 || || | |||||| ||||||| |||| ||||||| || ||||| || Sbjct 596524 TTGTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATT 596465 Query 1512 AATATGTATGAAGTATGAGCACCCGCA 1538 ||||||| | | |||| ||| || || Sbjct 596464 AATATGTTGGTAATATGTGCAACCACA 596438 >seq1129 Length=1508174 Score = 78.8 bits (86), Expect = 2e-11 Identities = 264/403 (66%), Gaps = 20/403 (5%) Strand=Plus/Minus Query 2216 GAGTTAATTGCTCCGGCGTAAGCATCATTGGC---TGTTTGTTGGCCTCCTCTTGCAGAT 2272 || ||||| ||| | ||||| ||| || || |||||| | | || || |||||| Sbjct 695298 GAATTAATCGCTTCAGCGTATACAT-AT--GCAATTGTTTGCTTACATCTCCTAGCAGAT 695242 Query 2273 CTTGCATCGATTTGAAATTCTCCCCATTCGAGGGTGTCGCCGTCCTTGTCGATGTAGGAC 2332 ||| ||| |||| ||| || || || || | | || || ||||| || ||||| || Sbjct 695241 CTTTGATCAATTTCAAAATCACCTCAATCTACGTACTCTCCCTCCTTTTCAATGTACGAG 695182 Query 2333 TTGACATCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGTTA 2392 || ||||| ||| ||||||| || | || | |||||| | | ||||| Sbjct 695181 TTAACATCAGAGGCTAATTTAGCAGATTGAACATTTGTATGGAATTAGATAGTTTTGTTA 695122 Query 2393 GGGGATATGAGGTCGAAGAATCGCTGATTC-TGGCACTTGTACTTCCCTTCGAATTGCAT 2451 ||| | | | |||||| || | ||||| ||| || | | |||| | ||| || | Sbjct 695121 GGGTGTTTTATGTCGAAAAACCTTTGATTGATGGAACA-GAATTTCCTTGTGAACTGGAG 695063 Query 2452 AAGCACATGGAGATGAGGTTCGCCATTCTCGTGGAGTTCTCTGCAAATTTTAATATATTT 2511 ||| | || || ||||| || || ||| |||| ||| || | | ||| || Sbjct 695062 AAGTATGTGCGAATATGGTTCCCCGTTGCTGTGTAGTTTTCTACACTTATGAAT----TT 695007 Query 2512 TTTATTGGTTGGGGTATTTAA----TTTGAGTATTTGTTCGAGTGCCTCTTCTTTGGATA 2567 | |||| || ||| || || | |||||| || | || | || ||| | || | Sbjct 695006 TATATTTGTAGGG-TAGTTGAGGATTTTGAGA---TGATGAAGACCATCATCTATTGAGA 694951 Query 2568 GAGAGCATTTTGGGAAAGTGAGGAAATAATTTTTTGCATTTAT 2610 |||| ||| | ||||||||||||||||| ||||| |||||| Sbjct 694950 GAGAACATCTAGGGAAAGTGAGGAAATAGTTTTTGCTATTTAT 694908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8822070180090