Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014647.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq519 107 3e-20 seq1694 77.0 6e-11 >seq519 Length=3254320 Score = 107 bits (118), Expect = 3e-20 Identities = 243/359 (68%), Gaps = 6/359 (2%) Strand=Plus/Plus Query 2228 CCTCTTGCAGATCTTCCATCGATCTGAAATTCCCCCCACTCGAGAATGTCCCCGTCCTTG 2287 || || |||||||||||||| || ||||| || | || || | ||| || ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2288 GCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGT 2347 |||| || || || || | ||| | ||||||| || | || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2348 GCTGACCTAGTTGGG-GATACGAGGTCGAAGAATCTCTGATTCTTGCACTGGTATTTGCC 2406 | || | ||| |||| | ||| || |||| ||||| |||| | |||| || Sbjct 1743262 ATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2407 TTCGAACTGGAGGAGCACGTGAAGATGAGGTTCCCCATTCTCGTGAAGCTCTCTGCAGAT 2466 | ||| |||| || || || | ||| |||||||| || ||| || ||| |||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2467 TCTAATGTATTTTTTGTTTACTGGGGT--TTGTAGATTTTGTAATTGGGAAAGTGCTTCC 2524 ||| ||| | |||| | || | |||| ||| | ||||| | || ||| || || Sbjct 1743381 TCTTATG-AATTTTAGATTTGTAGGGTAGTTGAGGCTTTTG-AGATGATGAAGAGCATCA 1743438 Query 2525 TCTTTAGTAAGAGAGCATGTGGGATAAGTGATGAAATAATTTTTGGCATTTATTTTAAA 2583 ||||| || || || ||| | || |||||| ||||| ||||||| ||||||| |||| Sbjct 1743439 TCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATTCTAAA 1743497 Score = 96.9 bits (106), Expect = 6e-17 Identities = 265/394 (67%), Gaps = 14/394 (4%) Strand=Plus/Plus Query 2235 CAGATCTTCCATCGATCTGAAATTCCCCCCACTCGAGAATGTCCCCGTCCTTGGCGATAT 2294 ||||||||||||| || ||||| || |||| || | | ||| || ||||| | || | Sbjct 1748964 CAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGT 1749023 Query 2295 AGGACTTGACG--TCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGA 2352 | || || || || || | |||||||| || | || |||||||| || | Sbjct 1749024 ATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGT 1749083 Query 2353 CCTAGTTGGGGATACGAGGTCGAAGAATCTCTGATTCTTGCACTGGTATTTGCCTTCGAA 2412 ||| || ||| | | |||||| || | ||||| |||| | |||| ||| ||| Sbjct 1749084 TCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAA 1749142 Query 2413 CTGGAGGAGCACGTGAAGATGAGGTTCCCCATTCTCGTGAAGCTCTCTGCAGATTCTAAT 2472 || ||| | || || | ||| ||||||| | || ||| || |||||||| | | | || Sbjct 1749143 CTAGAG-ATTACATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGCACACTTTTAT 1749200 Query 2473 GTATTTTTTGTTTACTGGGGT--TTGTAGATTTTGTAATTGGGAAAGTGCTTCCTCTTTA 2530 | |||| ||| | |||| ||| | ||||| || ||| | | || ||||| Sbjct 1749201 GAATTTAAGATTTG-TAGGGTAGTTGAGGTTTTTGAGATGACGAA-GAACATCATCTTTT 1749258 Query 2531 GTAAGAGAGCATGTGGGATAAGTGATGAAATAATTTTTGGCATTTATTTTAA--ATGGTT 2588 || || | ||| | || |||||| |||||||||||| ||||||| ||| ||| | Sbjct 1749259 GTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCTAAACATGTTA 1749318 Query 2589 TTGGAGGAGCCA-TGGTCAATGGACACCGATTGA 2621 ||| ||||||| | |||| | ||||||||| Sbjct 1749319 TTG--GGAGCCATTTTTCAAATGTTACCGATTGA 1749350 >seq1694 Length=789422 Score = 77.0 bits (84), Expect = 6e-11 Identities = 232/355 (65%), Gaps = 4/355 (1%) Strand=Plus/Minus Query 2231 CTTGCAGATCTTCCATCGATCTGAAATTCCCCCCACTCGAGAATGTCCCCGTCCTTGGCG 2290 || ||||||||||||||||| ||||| || ||||| || | ||| || ||||| | Sbjct 599257 CTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTCA 599198 Query 2291 ATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCT 2350 || || || || || | ||| ||||| | ||| | | |||||||| || Sbjct 599197 ATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATTGAATA 599138 Query 2351 GACCTAGTTGGGGATACGAGGTCGAAGAATCTCTGATTCTTGCACTGGTATTTGCCTTCG 2410 | || | ||| | | |||||| || || |||| | || | |||| ||| | Sbjct 599137 GTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTCAACAGAATTTTCCTGTG 599079 Query 2411 AACTGGAGGAGCACGTGAAGATGAGGTTCCCCATTCTCGTGAAGCTCTCTGCAGATTCTA 2470 || | ||| || ||||| | ||| |||||||| || || | |||| ||| | ||| Sbjct 599078 AATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTAATTCTCAGCACACTCTT 599019 Query 2471 ATGTATTTTTTGTTTACTGGGGT--TTGTAGATTTTGTAATTGGGAAAGTGCTTCCTCTT 2528 ||| |||| |||| | | || ||| | |||| || || ||| | || |||| Sbjct 599018 ATGAATTTGAGATTTA-TAGCGTAGTTGGGGTTTTTTGAAATGATGAAGAACATCATCTT 598960 Query 2529 TAGTAAGAGAGCATGTGGGATAAGTGATGAAATAATTTTTGGCATTTATTTTAAA 2583 | ||||||||| | || ||||| |||||| ||| | ||||||| |||| Sbjct 598959 TTAAGAGAGAGCATCTTGGTAAAGTGTGGAAATAGTTTAAGCTATTTATTCTAAA 598905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8703683903360