Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014707.1 Length=2736 Score E Sequences producing significant alignments: (Bits) Value seq3069 107 3e-20 seq1129 95.1 2e-16 seq2957 93.3 7e-16 seq519 93.3 7e-16 seq1694 80.6 5e-12 >seq3069 Length=10854949 Score = 107 bits (118), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 1279 TTCCTGAGGTTGTGATTGAATTGTATCTGAACGGAGATGATGTCTTCCT--TCATTAGGA 1336 |||||||||||| |||||||||||||| | |||||||| | | | ||| | Sbjct 3754408 TTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTA--A 3754465 Query 1337 ACGGCCTGTTGTGGTGTTCTGTTATCTTGAAATAGAGGGGATTTGGGGTTTCCCAGATAT 1396 | || || | |||||| ||||| ||||||||| ||||||||||| ||| || |||| Sbjct 3754466 ATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATAT 3754525 Query 1397 ACACGCCATTCATTGCA-TGACCTGCAGTGATGGATTCCCCTGTGCGTGAATCCATGGTT 1455 | ||| |||| ||||| | | | | ||||| || ||| ||||| ||| ||| ||| Sbjct 3754526 ATACGTCATT-GTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTT 3754584 Query 1456 GTGGCAGTTGATGTGTACGTAGTATGAGCAGCCACA 1491 | ||| || |||| | |||||||| ||| ||||| Sbjct 3754585 CTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 >seq1129 Length=1508174 Score = 95.1 bits (104), Expect = 2e-16 Identities = 241/355 (68%), Gaps = 25/355 (7%) Strand=Plus/Minus Query 1632 TTTTCCTC---ATCGAGGTATTCTCTATAGCAGGAATTGGGCCCAGAATTGCAGAGGAAG 1688 |||||||| ||| ||| | ||| ||||||| | | || | ||| || | ||| Sbjct 679415 TTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAG 679356 Query 1689 ATAG-TGGGAA-TACCTCCTTTAATTTGAACTGGTTTCCCGTACTTGGTGTTACTTTGCC 1746 || | ||||| || | |||||||| |||| |||||||| |||||| |||||||||| Sbjct 679355 ATTGATGGGAGGTAAC--CTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCC 679298 Query 1747 AGTCCCTCTGGACCCCCATGAACTCTTTAAAATG------CTTTAGGT-AGTGGGGGTCT 1799 | | | | | | |||| || || ||||| |||| ||||| || |||||| || | Sbjct 679297 AAT-CTTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGT-T 679240 Query 1800 ACGTCATCAATGATGTTATACCATGCATCAT--TTGAATA-TATCTTGCGACTCAGATCT 1856 || ||||| |||| ||||| |||||||| | ||||| | ||| | | |||| Sbjct 679239 ACATCATCTATGACATTATATGTTGCATCATTGTGGAATACTGATTTG---TTGAAATCT 679183 Query 1857 AA---ATGTCCACACAGGTAATTGTGTGGTCCCAAAGACCTGGCCCACATTGTCTTGCCC 1913 || ||| || | |||||| || | | | || | |||| | | || ||||| Sbjct 679182 AAGTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCT 679123 Query 1914 GTACGACTATCACCCTCAATGACGATACTTTTAGGTCTCAATGGCCGCGCAGCGG 1968 | ||||| || ||||||| |||||||||||||| ||||| |||| ||| Sbjct 679122 ATTCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq2957 Length=4215098 Score = 93.3 bits (102), Expect = 7e-16 Identities = 160/226 (71%), Gaps = 5/226 (2%) Strand=Plus/Plus Query 1279 TTCCTGAGGTTGTGATTGAATTGTATCTGAACGGAGATGATGTCTTCCTTCATTAGGAAC 1338 ||| ||||||||| ||||| |||||||| | | ||||||| || | ||| Sbjct 1238755 TTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTGTTGAAT 1238814 Query 1339 GGCCTGTTGTGGTGTTCTGTTATCTTGAAATAGAGGGGATTTGGGGTTTCCCAGATATAC 1398 | || | |||||| |||||||||||||||| || ||||||| |||| || |||| Sbjct 1238815 GATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAGGTATAT 1238874 Query 1399 ACGCCATTCATTGCA-TGACCTGCAGTGATGGATTCC-CCTGTGCGTGAATCCATGGTTG 1456 || |||| ||||| ||| | ||| ||| || |||| | ||||| ||||||| ||| Sbjct 1238875 ACTTCATT-GTTGCACTGAGCCGCAATGA-GGTTTCCATCAGTGCGAAAATCCATTGTTC 1238932 Query 1457 TGGCAGTTGATGTGTACGTAGTAT-GAGCAGCCACACTCGAGGTCA 1501 |||| ||||| | ||| ||| | ||| ||||||| || ||| Sbjct 1238933 ATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA 1238978 >seq519 Length=3254320 Score = 93.3 bits (102), Expect = 7e-16 Identities = 155/217 (71%), Gaps = 9/217 (4%) Strand=Plus/Plus Query 1279 TTCCTGAGGTTGTGATTGAATTGTATCTGAACGGAGATGATGTCTTCCTTCATTAGGAAC 1338 |||||||| |||| ||||| |||||||| | |||||||| | || | || Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1339 GGCCTGTTGTGGTGTTCTGTTATCTTGAAATAGAGGGGATTTGGGGTTTCCCA--GATAT 1396 | || | |||| | |||||||||||||||||||| |||||| |||||| ||||| Sbjct 1741937 TGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATAT 1741996 Query 1397 ACACGCCATTCATTGCA-TGA-CCTGCAGTGATGGATTCCCCTGTGCGTGAATCCATGGT 1454 ||| ||||| ||||| ||| ||| ||||| |||||| ||| | ||||||| || Sbjct 1741997 ACA--CCATT-GTTGCACTGAGCCT--AGTGAGATGTTCCCCGGTGTGAAAATCCATCGT 1742051 Query 1455 TGTGGCAGTTGATGTGTACGTAGTATGAGCAGCCACA 1491 | ||||| |||||| ||| ||| ||| ||||| Sbjct 1742052 TCCTACAGTTAATGTGTTGGTAATATATGCAACCACA 1742088 >seq1694 Length=789422 Score = 80.6 bits (88), Expect = 5e-12 Identities = 105/143 (73%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 1350 GTGTTCTGTTATCTTGAAATAGAGGGGATTTGGGGTTTCCCAGATATACACGCCATTCAT 1409 |||| |||||||||||||||||| ||||||| |||||| ||| |||||||| | Sbjct 596579 GTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATT-GT 596521 Query 1410 TGCA-TGACCTGCAGTGATGGATTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTGATG 1468 |||| || | |||||| |||||| |||| ||||||| ||| ||| || || Sbjct 596520 TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTAATA 596461 Query 1469 TGTACGTAGTATGAGCAGCCACA 1491 ||| ||| |||| ||| ||||| Sbjct 596460 TGTTGGTAATATGTGCAACCACA 596438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8646085995176