Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014745.1 Length=2764 Score E Sequences producing significant alignments: (Bits) Value seq1129 95.1 2e-16 >seq1129 Length=1508174 Score = 95.1 bits (104), Expect = 2e-16 Identities = 220/329 (67%), Gaps = 12/329 (4%) Strand=Plus/Minus Query 1696 TCTTTATAGGATGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTA 1755 ||||||||| | | | | ||||||||| || | ||||||| ||||| | |||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1756 ATTTGAACTGGCTTCCCGTATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCACCCATGAAC 1815 ||| |||| || ||||| || || || |||||||| || ||||| | || || || Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTTGCCC-CCAATCAAA 679276 Query 1816 TCCTTAAAGTGTTTCAGAT-------AATGCGGGTCAACATCATCTATGACGTTATACCA 1868 || || | || |||| | | || | || | ||||||||||||| ||||| Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTA-CATCATCTATGACATTATATGT 679217 Query 1869 TGCGTCATTACTGAACACCTTTGGGCTCAGATCAA---GATGGCCGCACAGATAATTATG 1925 ||| ||||| ||| || | | | | ||| | |||||||| | |||||||| Sbjct 679216 TGCATCATTGTGGAATACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATG 679157 Query 1926 AGGCCCAAGACTTCTGGCCCATACGGTCTTTCCTGTTCTGCTTTCCCCTTCAATTACTAT 1985 | | | || | |||| | || || ||| ||| ||| |||||||| | ||| Sbjct 679156 ACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATTAT 679097 Query 1986 ACTAATCGGTCTACCTGGCCGCGCAGCGG 2014 ||| | |||||| |||||| |||| ||| Sbjct 679096 ACTTTTAGGTCTATCTGGCCACGCATCGG 679068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8732473529730