Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014794.1 Length=2627 Score E Sequences producing significant alignments: (Bits) Value seq519 136 7e-29 seq1129 123 4e-25 seq1694 122 1e-24 >seq519 Length=3254320 Score = 136 bits (150), Expect = 7e-29 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 1505 TCCAGTTCTTGAGACCTGTATTTTCCTCTTTGTCTAGGAAGTCTTTATAACTGGCACCCT 1564 |||| ||||||||| || ||||||||| || |||||||| |||||||| ||||||| Sbjct 1742271 TCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCT 1742330 Query 1565 CACCTGGATTGCAAAGCACGATTGATGGAATCCCTCCTTTAATTTGAACTGGCTTGCCGT 1624 ||| | ||| ||| | ||||||||||| || || |||||||||| ||| | || | Sbjct 1742331 CACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAA 1742390 Query 1625 ATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTG----CTTT 1680 | |||||||| ||||| || || || |||| | | ||||||||| || || Sbjct 1742391 ACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTAC 1742450 Query 1681 AGCTTTAAATATTGCGGTGCGACGTCATCAATGACGTTATA 1721 | |||||| ||| || || || ||||||||||| ||||| Sbjct 1742451 ATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 Score = 96.9 bits (106), Expect = 6e-17 Identities = 238/353 (67%), Gaps = 6/353 (2%) Strand=Plus/Plus Query 2110 TGCTGACCTCCTCTAGCAGATCTGCCGTCGATTTGGAATTGCCCCCATTCGATGGTGTCT 2169 |||| || ||| ||||||||||| || || ||||| || | | || || | | |||| Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCT 1743192 Query 2170 CCGTCCTTCTCGACGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGA 2229 || ||||| |||| ||| || || || | ||| | ||||||| || | || || Sbjct 1743193 CCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGA 1743252 Query 2230 TGGAAATGTACTGACCTGGTTGGG-GACACCATATCGAAGAATCTGTTATTCGTGCACTG 2288 ||||| || | | ||| | ||| || | || || || |||| | ||| ||||| Sbjct 1743253 TGGAATTGAATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACA 1743311 Query 2289 GTACTTGCCTTCGAACTGTATGAGAACGTGGAGATGAGGCTCCCCATTTTCGTGTAATTC 2348 | | || ||| ||| || || || || || | ||| || ||||| || ||||| ||| Sbjct 1743312 GAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTC 1743371 Query 2349 TCTGCAAACCTTGATGAACTTCTTGTTTACTGGAGTTGTT-AGGTTTTGTAATTGGGAAA 2407 | |||| || | ||||| || | | || | | || ||| ||| ||| | || || Sbjct 1743372 TTTGCACACTCTTATGAA-TTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAA 1743430 Query 2408 GTGCTTCTTCTTTAGTAAGAGAGCA-CTGGGGATATGTGAGGAAATAGTTTTT 2459 | || || ||||| || || || || || |||| | |||||||||| ||||| Sbjct 1743431 GAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTT 1743482 >seq1129 Length=1508174 Score = 123 bits (136), Expect = 4e-25 Identities = 159/218 (73%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 1504 GTCCAGTTCTTGAGACCTGTATTTTCCTCTTTGTCTAGGAAGTCTTTATAACTGGCACCC 1563 ||| | |||||||| | |||||||||||| |||||||| |||||||| | ||||| Sbjct 679436 GTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCT 679377 Query 1564 TCACCTGGATTGCAAAGCACGATTGATGGAATCCCTCCTTTAATTTGAACTGGCTTGCCG 1623 ||||||||||| || | | ||||||||| | ||||||||| |||| || || || Sbjct 679376 TCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCA 679317 Query 1624 TATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGC 1683 || |||||||| ||||| | ||| | | |||| | | |||||| | ||||| | | Sbjct 679316 TACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATC 679258 Query 1684 TTTAAATATTGCGGTGCGACGTCATCAATGACGTTATA 1721 ||||| || || | || ||||| ||||| ||||| Sbjct 679257 TTTAAGTAAGTGGGAGTTACATCATCTATGACATTATA 679220 >seq1694 Length=789422 Score = 122 bits (134), Expect = 1e-24 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1504 GTCCAGTTCTTGAGACCTGTATTTTCCTCTTTGTCTAGGAAGTCTTTATAACTGGCACCC 1563 ||||| |||||||| | ||||||||||| || |||| |||||||| ||||| Sbjct 599854 GTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCT 599795 Query 1564 TCACCTGGATTGCAAAGCACGATTGATGGAATCCCTCCTTTAATTTGAACTGGCTTGCCG 1623 ||||||||||| || | |||||||||| || | | |||||||||||| | || || Sbjct 599794 TCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCA 599735 Query 1624 TATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGC 1683 || ||||||| ||||| || || || |||| | || ||||||| | ||||| | | Sbjct 599734 TACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATC 599675 Query 1684 TTTAAATATTGCGGTGCGACGTCATCAATGACGTTAT 1720 ||||| || || || | ||||||||| | |||| Sbjct 599674 TTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTAT 599638 Score = 89.7 bits (98), Expect = 9e-15 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 1503 TGTCCAGTTCTTGAGACCTGTATTTTCCTCTTTGTCTAGGAAGTCTTTATAACTGGCACC 1562 || ||| ||||| || | |||||||||||| || | ||| ||| | || ||||| Sbjct 596259 TGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACC 596200 Query 1563 CTCACCTGGATTGCAAAGCACGATTGATGGAATCCCTCCTTTAATTTGAACTGGCTTGCC 1622 |||| | ||||||| | ||||||||||| || || |||||||||| ||| || || || Sbjct 596199 TTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCC 596140 Query 1623 GTATTTGCAATT 1634 || |||||||| Sbjct 596139 ATACTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8297298662284