Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014845.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq519 91.5 3e-15 seq3069 82.4 1e-12 >seq519 Length=3254320 Score = 91.5 bits (100), Expect = 3e-15 Identities = 345/527 (65%), Gaps = 17/527 (3%) Strand=Plus/Plus Query 2072 GAAAATATCTATCTAAATTAGAATTTAAATTATGAAATTGAAGTA-GAAAGTCTCTTGGG 2130 |||||| || | | ||||| ||||| ||||||||| |||| || |||| ||| ||||| Sbjct 1742997 GAAAAT-TCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCT-TTGGG 1743054 Query 2131 GCTTTTTCCTTCAGTATATTGAGGGCCTGAGCTTTGGACCCTGCGTTGATTGCCTCGGCA 2190 | || || || | ||| | | | | || | |||| | || || || | | Sbjct 1743055 TCATTCTCTTTTATTATTTGTAATGTTGAATCTCTTGACCTAGAATTAATCGCTTTAGTG 1743114 Query 2191 TATGCGTCGTTGGCAGTTTGGCAACCTCCTGTAGCTGATCTTCCATCGACTTGGAAAACT 2250 ||| | || | |||| || ||| |||| ||||||||||| | ||| ||| | Sbjct 1743115 TATACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCA 1743174 Query 2251 CCATGATCAAGGATGTCTCCGTCTTTCTCCATGTAGGTTTGGACAT---CGCTTGAGCTT 2307 | ||| | | |||||| || || || ||||| | || |||| | |||| | Sbjct 1743175 TCTCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGA---T 1743231 Query 2308 TTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTAGTTGGGGAGGT-GAGGTCGAA 2366 |||| |||| || ||||||| || | || ||| ||| | | | ||| || Sbjct 1743232 TTAGAAAATTGAACATTTTGATGGAATTGAATGGTTCT-GTTAGGGTGATATATGTCAAA 1743290 Query 2367 GAATCTATTG-TTCCTGCACTGGAACTTTCCTTCGAACTGGATGAGAACACGCAAGTGAG 2425 |||| |||| || |||| ||| || ||| ||| ||||| || ||| |||| || | Sbjct 1743291 AAATC-ATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTG 1743349 Query 2426 GATTCCCATCTTCATGAAGTTCTCTGCAGATTCTAATGAATTTTTTGTTTACTGGGGTTT 2485 | | ||| | || |||||| |||| | ||| ||||||||| ||| ||| | Sbjct 1743350 GTTCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGT 1743409 Query 2486 GGAGATTTAAGAATTGGGAAAGTGCTTCTTCTTTAGTCAGGGAGCA-CTTGGGATAAGTG 2544 ||| || || || ||| || || ||||| || ||||| || ||||||| ||||| Sbjct 1743410 TGAGGCTTTTGAGATGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTG 1743468 Query 2545 AGAAAATAATTTTTGGAATATATTTGAAAGCGTTTGGAAGGCATGTT 2591 || |||| ||||||| || |||| ||| | |||| || ||| || Sbjct 1743469 AGGAAATGATTTTTGCTATTTATTCTAAACC--TTGGGAGCCATTTT 1743513 >seq3069 Length=10854949 Score = 82.4 bits (90), Expect = 1e-12 Identities = 191/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 1222 AGTCTGAGGGTGT-AAGGTCGTCCAGATTCGGAAGGTTAGAAAACACTTGTGCACTCCCA 1280 |||| || ||||| || ||||||||||| ||| || | ||| || | | || Sbjct 3754344 AGTC-GAAGGTGTTAATGTCGTCCAGATCTTGAAAAATATCCATGCCTTCTGAAATTTCA 3754402 Query 1281 GAGCTTTCCGTAGGTTGTAGTTGAATTGGATCCTCATTGTTATGATGTCCATGTTCGTCG 1340 ||||||| |||||| |||||||||| ||| || ||||||||| || |||| | Sbjct 3754403 AGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCG-TGGTCGTTG 3754461 Query 1341 TGAA-TGGACGGTTGTCGTGGCTGAGGATTTTGAAATAAAGGGGATTTGGAACCTTCCAG 1399 | || ||| | | | ||| | | |||||||| ||||||||||| || | || Sbjct 3754462 TTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAA 3754521 Query 1400 ATATAGACGCCATTCGTTG-AATGAGCTGCAGTGATGCGTTCCCCTTTGCGAGAATCCAT 1458 ||||| ||| |||| |||| | | ||| | ||||| || ||| ||||| ||| ||| Sbjct 3754522 ATATATACGTCATT-GTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACAT 3754580 Query 1459 GGTTGTGGCAGTTGATACTTAGGTAATAGCTGCATCCACA 1498 ||| | ||| || || | |||| || |||| ||||| Sbjct 3754581 TGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8655685646540